FastQCFastQC Report
Tue 24 Nov 2020
CHM13_CA_ChIP_1_trimmed_R1_q20.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameCHM13_CA_ChIP_1_trimmed_R1_q20.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56101931
Sequences flagged as poor quality0
Sequence length100-151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGACAGAATGATTCTCAGAAACTCCTTTGTGATGTGTGCGTTCAACTCAC814900.14525346730043925No Hit
TGCAGACTTTACAAACAGAGTGTTTCCTAACTGCTCTATGAAAAGAAAGG763440.13608087750134662No Hit
AGGAAATATCTTCCCATAAAAACTAGACAGAAGCATTCTCAGAAACTTGT637330.11360215034309604No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.7)