FastQCFastQC Report
Wed 25 Nov 2020
CHM13_CA_ChIP_1_trimmed_R1_q20_val_1.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameCHM13_CA_ChIP_1_trimmed_R1_q20_val_1.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53838306
Sequences flagged as poor quality0
Sequence length100-151
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGACAGAATGATTCTCAGAAACTCCTTTGTGATGTGTGCGTTCAACTCAC764900.14207356375588787No Hit
TGCAGACTTTACAAACAGAGTGTTTCCTAACTGCTCTATGAAAAGAAAGG748210.13897354051221447No Hit
AGGAAATATCTTCCCATAAAAACTAGACAGAAGCATTCTCAGAAACTTGT632300.11744425985468414No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.7)