FastQCFastQC Report
Tue 24 Nov 2020
CHM13_CA_ChIP_2_trimmed_R1_q20.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameCHM13_CA_ChIP_2_trimmed_R1_q20.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64556170
Sequences flagged as poor quality0
Sequence length100-151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGACAGAATGATTCTCAGAAACTCCTTTGTGATGTGTGCGTTCAACTCAC1177750.1824380225778574No Hit
TGCAGACTTTACAAACAGAGTGTTTCCTAACTGCTCTATGAAAAGAAAGG952560.14755522206475385No Hit
TACACAGAAGAATTCTCAGTAACTTATTTGTGGTGTGTGTATTCAACTCA781950.1211270742982429No Hit
AAGGCTAGACAGAAGAATTCCCAGTAACTTCCTTGTGTTGTGTGTGTTCA726150.11248343884093495No Hit
AGGAAATATCTTCCCATAAAAACTAGACAGAAGCATTCTCAGAAACTTGT718900.11136038584692988No Hit
ACTCCTTTGTGATGTGTGCGTTCAACTCACAGAGTTTAACCTTTCTTTTC675160.10458489095620141No Hit
TGCTAGACAGAAGAATTCTCAGTAACTTCCTTGTGTTGTGTGTATTCAAC672060.10410468898635096No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.7)