FastQCFastQC Report
Wed 25 Nov 2020
CHM13_CA_ChIP_2_trimmed_R1_q20_val_1.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameCHM13_CA_ChIP_2_trimmed_R1_q20_val_1.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62559680
Sequences flagged as poor quality0
Sequence length100-151
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGACAGAATGATTCTCAGAAACTCCTTTGTGATGTGTGCGTTCAACTCAC1131730.1809040583327792No Hit
TGCAGACTTTACAAACAGAGTGTTTCCTAACTGCTCTATGAAAAGAAAGG938890.15007909247617635No Hit
TACACAGAAGAATTCTCAGTAACTTATTTGTGGTGTGTGTATTCAACTCA780430.12474967902649117No Hit
AAGGCTAGACAGAAGAATTCCCAGTAACTTCCTTGTGTTGTGTGTGTTCA721650.11535385091483845No Hit
AGGAAATATCTTCCCATAAAAACTAGACAGAAGCATTCTCAGAAACTTGT714580.11422373004465496No Hit
TGCTAGACAGAAGAATTCTCAGTAACTTCCTTGTGTTGTGTGTATTCAAC667460.10669172220829773No Hit
ACTCCTTTGTGATGTGTGCGTTCAACTCACAGAGTTTAACCTTTCTTTTC667070.10662938173596796No Hit
AGGTCTGAATATCCACTTGCAGACTTTACAAACAGAGTGTTTCCTAACTG633650.10128728279940051No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.7)