FastQCFastQC Report
Wed 25 Nov 2020
CHM13_CA_ChIP_2_trimmed_R2_q20_val_2.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameCHM13_CA_ChIP_2_trimmed_R2_q20_val_2.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62559680
Sequences flagged as poor quality0
Sequence length100-151
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGACAGAATGATTCTCAGAAACTCCTTTGTGATGTGTGCGTTCAACTCAC1210910.19356077268937438No Hit
TGCAGACTTTACAAACAGAGTGTTTCCTAACTGCTCTATGAAAAGAAAGG1028420.16439022705998496No Hit
TACACAGAAGAATTCTCAGTAACTTATTTGTGGTGTGTGTATTCAACTCA821580.1313273980941079No Hit
AGGAAATATCTTCCCATAAAAACTAGACAGAAGCATTCTCAGAAACTTGT743130.11878737231392489No Hit
AAGGCTAGACAGAAGAATTCCCAGTAACTTCCTTGTGTTGTGTGTGTTCA722740.11552808454263193No Hit
TGCAAATTCCACAAAAAGAGTGTTTCAAGTCTGCTCTGTGTAAAGGATCG681320.10890720668647921No Hit
TGCTAGACAGAAGAATTCTCAGTAACTTCCTTGTGTTGTGTGTATTCAAC680000.10869620816474765No Hit
ACTCCTTTGTGATGTGTGCGTTCAACTCACAGAGTTTAACCTTTCTTTTC672540.10750374682223438No Hit
AGGTCTGAATATCCACTTGCAGACTTTACAAACAGAGTGTTTCCTAACTG627440.10029463066307245No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.7)