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Building DAG of jobs...
Your conda installation is not configured to use strict channel priorities. This is however crucial for having robust and correct environments (for details, see https://conda-forge.org/docs/user/tipsandtricks.html). Please consider to configure strict priorities by executing 'conda config --set channel_priority strict'.
Using shell: /usr/bin/bash
Provided cores: 4
Rules claiming more threads will be scaled down.
Provided resources: mem_mb=20000, mem_mib=19074, disk_mb=1000, disk_mib=954
Select jobs to execute...

[Sun Jun 30 18:38:17 2024]
rule run_repeatmasker:
    input: results/repeatmasker/seq/NA12892_correct_ALR_regions.renamed.fa
    output: results/repeatmasker/repeats/NA12892/NA12892_correct_ALR_regions.renamed.fa.out
    log: logs/repeatmasker/repeatmasker_NA12892.log
    jobid: 0
    benchmark: benchmarks/repeatmasker/repeatmasker_NA12892.tsv
    reason: Forced execution
    wildcards: sm=NA12892
    threads: 4
    resources: mem_mb=20000, mem_mib=19074, disk_mb=1000, disk_mib=954, tmpdir=/tmp/1991829.1.eichler-short.q


        if [ -s results/repeatmasker/seq/NA12892_correct_ALR_regions.renamed.fa ]; then
            RepeatMasker             -engine rmblast             -species human             -dir results/repeatmasker/repeats/NA12892             -pa 4             results/repeatmasker/seq/NA12892_correct_ALR_regions.renamed.fa &> logs/repeatmasker/repeatmasker_NA12892.log
        else
            touch results/repeatmasker/repeats/NA12892/NA12892_correct_ALR_regions.renamed.fa.out
        fi
        
Activating conda environment: .snakemake/conda/8cd935aa15bd8c2240afe5af6f0c8cf2_
[Sun Jun 30 19:57:07 2024]
Finished job 0.
1 of 1 steps (100%) done