Index of /help/glogsdon/Shared_with_Shenghan/stainedglass_onlyvariation/StainedGlass/logs

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]merge_aln.chm13_chm1_cen10.60000.10000.log2025-01-27 13:02 0  
[ ]merge_list.chm13_chm1_cen10.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm13_chm1_cen10.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm13_chm1_cen10.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm13_chm1_cen10.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm13_chm1_cen10.60000.10000.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen10.60000.3.log2025-01-27 13:02 0  
[ ]make_windows.chm13_chm1_cen10.60000.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen10.60000.ref_0.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen10.60000.ref_1.log2025-01-27 13:02 0  
[ ]aln_prep.chm13_chm1_cen10.60000.10000.ref_1.log2025-01-27 13:02 645  
[ ]aln_prep.chm13_chm1_cen10.60000.10000.ref_0.log2025-01-27 13:02 645  
[ ]split_windows.chm13_chm1_cen10.60000.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen10.60000.2.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen10.60000.1.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen10.60000.0.log2025-01-27 13:02 0  
[ ]aln_prep.chm13_chm1_cen8.60000.10000.ref_0.log2025-01-27 13:02 643  
[ ]split_fa.chm13_chm1_cen8.60000.ref_1.log2025-01-27 13:02 0  
[ ]aln_prep.chm13_chm1_cen8.60000.10000.ref_1.log2025-01-27 13:02 643  
[ ]query_prep.chm13_chm1_cen8.60000.0.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen8.60000.1.log2025-01-27 13:02 0  
[ ]split_windows.chm13_chm1_cen8.60000.log2025-01-27 13:02 0  
[ ]make_windows.chm13_chm1_cen8.60000.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen8.60000.2.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen8.60000.3.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen8.60000.ref_0.log2025-01-27 13:02 0  
[ ]sort_aln.chm13_chm1_cen5.80000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm13_chm1_cen5.80000.10000.log2025-01-27 13:02 0  
[ ]merge_list.chm13_chm1_cen5.80000.10000.log2025-01-27 13:02 0  
[ ]identity.chm13_chm1_cen5.80000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm13_chm1_cen5.80000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm13_chm1_cen5.80000.10000.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen11.60000.10000.0.ref_0.log2025-01-27 13:02 681  
[ ]aln.chm13_chm1_cen10.60000.10000.2.ref_1.log2025-01-27 13:02 678  
[ ]merge_aln.chm13_chm1_cen19.60000.10000.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen11.60000.10000.1.ref_1.log2025-01-27 13:02 681  
[ ]aln.chm13_chm1_cen11.60000.10000.0.ref_1.log2025-01-27 13:02 681  
[ ]aln.chm13_chm1_cen10.60000.10000.0.ref_1.log2025-01-27 13:02 678  
[ ]aln.chm13_chm1_cen11.60000.10000.3.ref_1.log2025-01-27 13:02 681  
[ ]aln.chm13_chm1_cen11.60000.10000.3.ref_0.log2025-01-27 13:02 682  
[ ]aln.chm13_chm1_cen10.60000.10000.1.ref_1.log2025-01-27 13:02 678  
[ ]aln.chm13_chm1_cen10.60000.10000.1.ref_0.log2025-01-27 13:02 678  
[ ]aln.chm13_chm1_cen11.60000.10000.2.ref_0.log2025-01-27 13:02 679  
[ ]aln.chm13_chm1_cen10.60000.10000.0.ref_0.log2025-01-27 13:02 678  
[ ]aln.chm13_chm1_cen10.60000.10000.3.ref_0.log2025-01-27 13:02 680  
[ ]aln.chm13_chm1_cen10.60000.10000.2.ref_0.log2025-01-27 13:02 678  
[ ]aln.chm13_chm1_cen11.60000.10000.1.ref_0.log2025-01-27 13:02 683  
[ ]aln.chm13_chm1_cen10.60000.10000.3.ref_1.log2025-01-27 13:02 678  
[ ]aln.chm13_chm1_cen11.60000.10000.2.ref_1.log2025-01-27 13:02 679  
[ ]identity.chm13_chm1_cen8.60000.10000.log2025-01-27 13:02 0  
[ ]merge_list.chm13_chm1_cen8.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm13_chm1_cen8.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm13_chm1_cen8.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm13_chm1_cen8.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm13_chm1_cen8.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm13_chm1_cen19.60000.10000.log2025-01-27 13:02 0  
[ ]merge_list.chm13_chm1_cen19.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm13_chm1_cen19.60000.10000.log2025-01-27 13:02 0  
[ ]make_windows.chm13_chm1_cen5.60000.log2025-01-27 13:02 0  
[ ]aln_prep.chm13_chm1_cen5.60000.10000.ref_0.log2025-01-27 13:02 643  
[ ]split_windows.chm13_chm1_cen5.60000.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen5.60000.10000.0.ref_0.log2025-01-27 13:02 679  
[ ]split_fa.chm13_chm1_cen5.60000.ref_0.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen5.60000.0.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen5.60000.ref_1.log2025-01-27 13:02 0  
[ ]aln_prep.chm13_chm1_cen5.60000.10000.ref_1.log2025-01-27 13:02 643  
[ ]query_prep.chm13_chm1_cen5.60000.3.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen5.60000.1.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen5.60000.2.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen5.60000.10000.0.ref_1.log2025-01-27 13:02 679  
[ ]aln.chm13_chm1_cen5.60000.10000.1.ref_1.log2025-01-27 13:02 679  
[ ]aln.chm13_chm1_cen5.60000.10000.3.ref_0.log2025-01-27 13:02 679  
[ ]aln.chm13_chm1_cen5.60000.10000.2.ref_0.log2025-01-27 13:02 679  
[ ]aln.chm13_chm1_cen5.60000.10000.1.ref_0.log2025-01-27 13:02 679  
[ ]aln.chm13_chm1_cen5.60000.10000.3.ref_1.log2025-01-27 13:02 677  
[ ]aln.chm13_chm1_cen5.60000.10000.2.ref_1.log2025-01-27 13:02 679  
[ ]split_fa.chm13_chm1_cen19.60000.ref_1.log2025-01-27 13:02 0  
[ ]make_windows.chm13_chm1_cen18.60000.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen19.60000.0.log2025-01-27 13:02 0  
[ ]make_windows.chm13_chm1_cen19.60000.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen19.60000.3.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen19.60000.2.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen19.60000.ref_0.log2025-01-27 13:02 0  
[ ]aln_prep.chm13_chm1_cen19.60000.10000.ref_0.log2025-01-27 13:02 645  
[ ]aln_prep.chm13_chm1_cen19.60000.10000.ref_1.log2025-01-27 13:02 645  
[ ]aln_prep.chm13_chm1_cen18.60000.10000.ref_0.log2025-01-27 13:02 645  
[ ]split_fa.chm13_chm1_cen18.60000.ref_1.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen18.60000.ref_0.log2025-01-27 13:02 0  
[ ]aln_prep.chm13_chm1_cen18.60000.10000.ref_1.log2025-01-27 13:02 645  
[ ]split_windows.chm13_chm1_cen19.60000.log2025-01-27 13:02 0  
[ ]split_windows.chm13_chm1_cen18.60000.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen18.60000.1.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen18.60000.0.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen18.60000.2.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen19.60000.1.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen18.60000.3.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen18.60000.10000.1.ref_1.log2025-01-27 13:02 681  
[ ]aln.chm13_chm1_cen19.60000.10000.1.ref_0.log2025-01-27 13:02 683  
[ ]aln.chm13_chm1_cen18.60000.10000.0.ref_1.log2025-01-27 13:02 681  
[ ]aln.chm13_chm1_cen19.60000.10000.1.ref_1.log2025-01-27 13:02 683  
[ ]aln.chm13_chm1_cen18.60000.10000.0.ref_0.log2025-01-27 13:02 681  
[ ]aln.chm13_chm1_cen18.60000.10000.1.ref_0.log2025-01-27 13:02 681  
[ ]aln.chm13_chm1_cen18.60000.10000.2.ref_0.log2025-01-27 13:02 681  
[ ]aln.chm13_chm1_cen19.60000.10000.2.ref_0.log2025-01-27 13:02 683  
[ ]aln.chm13_chm1_cen19.60000.10000.3.ref_0.log2025-01-27 13:02 683  
[ ]aln.chm13_chm1_cen18.60000.10000.2.ref_1.log2025-01-27 13:02 681  
[ ]aln.chm13_chm1_cen19.60000.10000.0.ref_0.log2025-01-27 13:02 682  
[ ]aln.chm13_chm1_cen19.60000.10000.0.ref_1.log2025-01-27 13:02 682  
[ ]aln.chm13_chm1_cen19.60000.10000.2.ref_1.log2025-01-27 13:02 682  
[ ]aln.chm13_chm1_cen18.60000.10000.3.ref_0.log2025-01-27 13:02 681  
[ ]aln.chm13_chm1_cen18.60000.10000.3.ref_1.log2025-01-27 13:02 681  
[ ]aln.chm13_chm1_cen19.60000.10000.3.ref_1.log2025-01-27 13:02 683  
[ ]identity.chm13_chm1_cen20_justHOR.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm13_chm1_cen20_justHOR.60000.10000.log2025-01-27 13:02 0  
[ ]merge_list.chm13_chm1_cen20_justHOR.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm13_chm1_cen20_justHOR.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm13_chm1_cen20_justHOR.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm13_chm1_cen20_justHOR.60000.10000.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen13.60000.10000.ref_1.log2025-01-27 13:02 655  
[ ]query_prep.chm1_v21vVerkko_cen13.60000.2.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen13.60000.10000.2.ref_0.log2025-01-27 13:02 688  
[ ]split_fa.chm1_v21vVerkko_cen15.60000.ref_1.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen15.60000.10000.ref_1.log2025-01-27 13:02 655  
[ ]pair_end_bed.chm1_v21vVerkko_cen15.60000.10000.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen15.60000.3.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen15.60000.10000.2.ref_0.log2025-01-27 13:02 687  
[ ]aln.chm1_v21vVerkko_cen12.60000.10000.3.ref_0.log2025-01-27 13:02 688  
[ ]aln.chm1_v21vVerkko_cen15.60000.10000.1.ref_1.log2025-01-27 13:02 688  
[ ]aln.chm1_v21vVerkko_cen15.60000.10000.1.ref_0.log2025-01-27 13:02 688  
[ ]aln_prep.chm1_v21vVerkko_cen14.60000.10000.ref_0.log2025-01-27 13:02 655  
[ ]query_prep.chm1_v21vVerkko_cen13.60000.0.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen15.60000.1.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen14.60000.10000.2.ref_0.log2025-01-27 13:02 688  
[ ]split_windows.chm1_v21vVerkko_cen15.60000.log2025-01-27 13:02 0  
[ ]aln_prep.chm13_chm1_cen4.60000.10000.ref_1.log2025-01-27 13:02 643  
[ ]make_windows.chm13_chm1_cen6.60000.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen4.60000.10000.0.ref_0.log2025-01-27 13:02 679  
[ ]aln_prep.chm13_chm1_cen4.60000.10000.ref_0.log2025-01-27 13:02 643  
[ ]split_fa.chm13_chm1_cen4.60000.ref_1.log2025-01-27 13:02 0  
[ ]make_R_figures.chm13_chm1_cen17.60000.10000.log2025-01-27 13:02 0  
[ ]make_windows.chm13_chm1_cen4.60000.log2025-01-27 13:02 0  
[ ]make_windows.chm13_chm1_cen3.60000.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen4.60000.ref_0.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen3.60000.0.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen6.60000.2.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen3.60000.ref_1.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen3.60000.ref_0.log2025-01-27 13:02 0  
[ ]aln_prep.chm13_chm1_cen3.60000.10000.ref_0.log2025-01-27 13:02 643  
[ ]aln_prep.chm13_chm1_cen3.60000.10000.ref_1.log2025-01-27 13:02 643  
[ ]merge_list.chm13_chm1_cen4.60000.10000.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen4.60000.3.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen6.60000.ref_0.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen6.60000.ref_1.log2025-01-27 13:02 0  
[ ]aln_prep.chm13_chm1_cen6.60000.10000.ref_0.log2025-01-27 13:02 643  
[ ]aln_prep.chm13_chm1_cen6.60000.10000.ref_1.log2025-01-27 13:02 643  
[ ]split_fa.chm13_chm1_cen7.60000.ref_0.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen3.60000.2.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen6.60000.0.log2025-01-27 13:02 0  
[ ]split_windows.chm13_chm1_cen3.60000.log2025-01-27 13:02 0  
[ ]split_windows.chm13_chm1_cen4.60000.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen3.60000.10000.2.ref_0.log2025-01-27 13:02 677  
[ ]split_windows.chm13_chm1_cen6.60000.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen4.60000.2.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen3.60000.1.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen6.60000.3.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen4.60000.1.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen6.60000.1.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen4.60000.0.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen6.60000.10000.1.ref_1.log2025-01-27 13:02 676  
[ ]aln.chm13_chm1_cen6.60000.10000.2.ref_0.log2025-01-27 13:02 676  
[ ]query_prep.chm13_chm1_cen3.60000.3.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen4.60000.10000.2.ref_0.log2025-01-27 13:02 679  
[ ]aln.chm13_chm1_cen6.60000.10000.3.ref_0.log2025-01-27 13:02 676  
[ ]aln.chm13_chm1_cen3.60000.10000.1.ref_0.log2025-01-27 13:02 680  
[ ]aln.chm13_chm1_cen6.60000.10000.0.ref_0.log2025-01-27 13:02 676  
[ ]aln.chm13_chm1_cen4.60000.10000.3.ref_0.log2025-01-27 13:02 678  
[ ]aln.chm13_chm1_cen4.60000.10000.2.ref_1.log2025-01-27 13:02 677  
[ ]aln.chm13_chm1_cen4.60000.10000.1.ref_0.log2025-01-27 13:02 677  
[ ]aln.chm13_chm1_cen3.60000.10000.1.ref_1.log2025-01-27 13:02 680  
[ ]aln.chm13_chm1_cen4.60000.10000.1.ref_1.log2025-01-27 13:02 677  
[ ]aln.chm13_chm1_cen6.60000.10000.0.ref_1.log2025-01-27 13:02 676  
[ ]aln.chm13_chm1_cen6.60000.10000.2.ref_1.log2025-01-27 13:02 676  
[ ]aln.chm13_chm1_cen6.60000.10000.1.ref_0.log2025-01-27 13:02 676  
[ ]aln.chm13_chm1_cen6.60000.10000.3.ref_1.log2025-01-27 13:02 676  
[ ]aln.chm13_chm1_cen3.60000.10000.0.ref_1.log2025-01-27 13:02 677  
[ ]aln.chm13_chm1_cen3.60000.10000.3.ref_0.log2025-01-27 13:02 680  
[ ]aln.chm13_chm1_cen3.60000.10000.0.ref_0.log2025-01-27 13:02 679  
[ ]aln.chm13_chm1_cen3.60000.10000.2.ref_1.log2025-01-27 13:02 677  
[ ]aln.chm13_chm1_cen4.60000.10000.3.ref_1.log2025-01-27 13:02 678  
[ ]aln.chm13_chm1_cen4.60000.10000.0.ref_1.log2025-01-27 13:02 679  
[ ]aln.chm13_chm1_cen3.60000.10000.3.ref_1.log2025-01-27 13:02 679  
[ ]aln_prep.chm13_chm1_cen7.60000.10000.ref_0.log2025-01-27 13:02 643  
[ ]aln_prep.chm13_chm1_cen7.60000.10000.ref_1.log2025-01-27 13:02 643  
[ ]make_windows.chm13_chm1_cen7.60000.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen7.60000.ref_1.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen7.60000.0.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen7.60000.10000.1.ref_0.log2025-01-27 13:02 681  
[ ]aln.chm13_chm1_cen7.60000.10000.1.ref_1.log2025-01-27 13:02 679  
[ ]aln.chm13_chm1_cen7.60000.10000.0.ref_0.log2025-01-27 13:02 679  
[ ]split_windows.chm13_chm1_cen7.60000.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen7.60000.10000.0.ref_1.log2025-01-27 13:02 679  
[ ]query_prep.chm13_chm1_cen7.60000.1.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen7.60000.2.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen7.60000.3.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen7.60000.10000.2.ref_1.log2025-01-27 13:02 677  
[ ]aln.chm13_chm1_cen7.60000.10000.3.ref_0.log2025-01-27 13:02 680  
[ ]aln.chm13_chm1_cen7.60000.10000.3.ref_1.log2025-01-27 13:02 679  
[ ]aln.chm13_chm1_cen7.60000.10000.2.ref_0.log2025-01-27 13:02 677  
[ ]query_prep.chm1_v21vVerkko_cen15.60000.2.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen15.60000.10000.2.ref_1.log2025-01-27 13:02 688  
[ ]aln.chm1_v21vVerkko_cen15.60000.10000.0.ref_1.log2025-01-27 13:02 688  
[ ]aln.chm1_v21vVerkko_cen12.60000.10000.1.ref_0.log2025-01-27 13:02 688  
[ ]identity.chm1_v21vVerkko_cen3.60000.10000.log2025-01-27 13:02 0  
[ ]merge_list.chm1_v21vVerkko_cen3.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm1_v21vVerkko_cen3.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm1_v21vVerkko_cen3.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm1_v21vVerkko_cen3.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm1_v21vVerkko_cen3.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm1_v21vVerkko_cen14.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm1_v21vVerkko_cen14.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm1_v21vVerkko_cen14.60000.10000.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen17.60000.ref_0.log2025-01-27 13:02 0  
[ ]make_windows.chm1_v21vVerkko_cen17.60000.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen15.60000.10000.3.ref_1.log2025-01-27 13:02 688  
[ ]query_prep.chm1_v21vVerkko_cen17.60000.0.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen17.60000.10000.ref_0.log2025-01-27 13:02 655  
[ ]aln.chm1_v21vVerkko_cen17.60000.10000.2.ref_0.log2025-01-27 13:02 689  
[ ]aln.chm1_v21vVerkko_cen17.60000.10000.1.ref_0.log2025-01-27 13:02 689  
[ ]aln.chm1_v21vVerkko_cen17.60000.10000.0.ref_0.log2025-01-27 13:02 689  
[ ]sort_aln.chm13_chm1_cen17.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm13_chm1_cen17.60000.10000.log2025-01-27 13:02 0  
[ ]merge_list.chm13_chm1_cen3.60000.10000.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen17.60000.10000.3.ref_1.log2025-01-27 13:02 689  
[ ]aln.chm1_v21vVerkko_cen17.60000.10000.1.ref_1.log2025-01-27 13:02 689  
[ ]merge_list.chm13_chm1_cen6.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm13_chm1_cen6.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm13_chm1_cen6.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm13_chm1_cen6.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm13_chm1_cen6.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm13_chm1_cen6.60000.10000.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen13.60000.ref_1.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen14.60000.10000.0.ref_1.log2025-01-27 13:02 688  
[ ]identity.chm13_chm1_cen20.60000.10000.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen14.60000.10000.ref_1.log2025-01-27 13:02 655  
[ ]make_R_figures.chm13_chm1_cen20.60000.10000.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen14.60000.10000.3.ref_1.log2025-01-27 13:02 689  
[ ]aln.chm1_v21vVerkko_cen13.60000.10000.1.ref_0.log2025-01-27 13:02 691  
[ ]pair_end_bed.chm13_chm1_cen17.60000.10000.log2025-01-27 13:02 0  
[ ]merge_list.chm1_v21vVerkko_cen14.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm13_chm1_cen20.60000.10000.log2025-01-27 13:02 0  
[ ]split_windows.chm1_v21vVerkko_cen14.60000.log2025-01-27 13:02 0  
[ ]identity.chm13_chm1_cen7.60000.10000.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen13.60000.10000.0.ref_0.log2025-01-27 13:02 688  
[ ]split_fa.chm1_v21vVerkko_cen14.60000.ref_1.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen17.60000.10000.3.ref_0.log2025-01-27 13:02 689  
[ ]split_windows.chm13_chm1_cen16.60000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm13_chm1_cen3.60000.10000.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen13.60000.10000.2.ref_1.log2025-01-27 13:02 688  
[ ]query_prep.chm1_v21vVerkko_cen13.60000.3.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen17.60000.10000.0.ref_1.log2025-01-27 13:02 689  
[ ]aln.chm13_chm1_cen9.60000.10000.2.ref_1.log2025-01-27 13:02 676  
[ ]aln.chm13_chm1_cen9.60000.10000.1.ref_1.log2025-01-27 13:02 676  
[ ]sort_aln.chm13_chm1_cen9.60000.10000.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen9.60000.10000.1.ref_0.log2025-01-27 13:02 676  
[ ]aln.chm13_chm1_cen9.60000.10000.2.ref_0.log2025-01-27 13:02 676  
[ ]aln.chm13_chm1_cen9.60000.10000.0.ref_0.log2025-01-27 13:02 676  
[ ]aln.chm13_chm1_cen9.60000.10000.0.ref_1.log2025-01-27 13:02 676  
[ ]aln.chm13_chm1_cen9.60000.10000.3.ref_1.log2025-01-27 13:02 676  
[ ]aln.chm13_chm1_cen9.60000.10000.3.ref_0.log2025-01-27 13:02 676  
[ ]aln.chm1_v21vVerkko_cen14.60000.10000.1.ref_0.log2025-01-27 13:02 689  
[ ]sort_aln.chm13_chm1_cen3.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm13_chm1_cen4.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm13_chm1_cen4.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm13_chm1_cen4.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm13_chm1_cen4.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm13_chm1_cen4.60000.10000.log2025-01-27 13:02 0  
[ ]make_windows.chm1_v21vVerkko_cen13.60000.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen15.60000.10000.0.ref_0.log2025-01-27 13:02 688  
[ ]identity.chm1_v21vVerkko_cen15.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm1_v21vVerkko_cen15.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm1_v21vVerkko_cen15.60000.10000.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen16.60000.ref_0.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen14.60000.ref_0.log2025-01-27 13:02 0  
[ ]make_R_figures.chm1_v21vVerkko_cen15.60000.10000.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen16.60000.10000.ref_1.log2025-01-27 13:02 655  
[ ]query_prep.chm1_v21vVerkko_cen16.60000.1.log2025-01-27 13:02 0  
[ ]make_windows.chm1_v21vVerkko_cen16.60000.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen16.60000.ref_1.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen16.60000.2.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen16.60000.3.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen16.60000.10000.0.ref_0.log2025-01-27 13:02 683  
[ ]aln.chm1_v21vVerkko_cen16.60000.10000.3.ref_0.log2025-01-27 13:02 689  
[ ]aln.chm1_v21vVerkko_cen16.60000.10000.0.ref_1.log2025-01-27 13:02 683  
[ ]aln.chm1_v21vVerkko_cen16.60000.10000.3.ref_1.log2025-01-27 13:02 689  
[ ]aln.chm1_v21vVerkko_cen16.60000.10000.2.ref_0.log2025-01-27 13:02 683  
[ ]aln.chm1_v21vVerkko_cen16.60000.10000.2.ref_1.log2025-01-27 13:02 685  
[ ]aln.chm1_v21vVerkko_cen16.60000.10000.1.ref_1.log2025-01-27 13:02 689  
[ ]aln_prep.chm1_v21vVerkko_cen16.60000.10000.ref_0.log2025-01-27 13:02 655  
[ ]identity.chm13_chm1_cen3.60000.10000.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen15.60000.10000.ref_0.log2025-01-27 13:02 655  
[ ]query_prep.chm1_v21vVerkko_cen16.60000.0.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen14.60000.2.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen13.60000.10000.3.ref_0.log2025-01-27 13:02 691  
[ ]split_fa.chm13_chm1_cen22.60000.ref_0.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen6.60000.10000.0.ref_0.log2025-01-27 13:02 686  
[ ]query_prep.chm1_v21vVerkko_cen17.60000.3.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen22.60000.1.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen5.60000.10000.2.ref_1.log2025-01-27 13:02 689  
[ ]query_prep.chm1_v21vVerkko_cen6.60000.0.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen5.60000.0.log2025-01-27 13:02 0  
[ ]split_windows.chm1_v21vVerkko_cen6.60000.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen5.60000.2.log2025-01-27 13:02 0  
[ ]make_windows.chm1_v21vVerkko_cen5.60000.log2025-01-27 13:02 0  
[ ]make_windows.chm1_v21vVerkko_cen6.60000.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen5.60000.ref_0.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen6.60000.ref_0.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen5.60000.ref_1.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen6.60000.ref_1.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen6.60000.10000.ref_1.log2025-01-27 13:02 653  
[ ]aln_prep.chm1_v21vVerkko_cen5.60000.10000.ref_1.log2025-01-27 13:02 653  
[ ]aln_prep.chm1_v21vVerkko_cen6.60000.10000.ref_0.log2025-01-27 13:02 653  
[ ]aln_prep.chm1_v21vVerkko_cen5.60000.10000.ref_0.log2025-01-27 13:02 653  
[ ]merge_list.chm1_v21vVerkko_cen5.60000.10000.log2025-01-27 13:02 0  
[ ]split_windows.chm1_v21vVerkko_cen5.60000.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen6.60000.1.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen6.60000.2.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen5.60000.3.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen6.60000.3.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen5.60000.1.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen6.60000.10000.3.ref_0.log2025-01-27 13:02 686  
[ ]aln.chm1_v21vVerkko_cen5.60000.10000.0.ref_0.log2025-01-27 13:02 689  
[ ]aln.chm1_v21vVerkko_cen6.60000.10000.1.ref_1.log2025-01-27 13:02 686  
[ ]aln.chm1_v21vVerkko_cen5.60000.10000.1.ref_0.log2025-01-27 13:02 689  
[ ]aln.chm1_v21vVerkko_cen6.60000.10000.2.ref_1.log2025-01-27 13:02 686  
[ ]aln.chm1_v21vVerkko_cen5.60000.10000.1.ref_1.log2025-01-27 13:02 689  
[ ]aln.chm1_v21vVerkko_cen5.60000.10000.3.ref_1.log2025-01-27 13:02 689  
[ ]aln.chm1_v21vVerkko_cen5.60000.10000.3.ref_0.log2025-01-27 13:02 689  
[ ]aln.chm1_v21vVerkko_cen6.60000.10000.1.ref_0.log2025-01-27 13:02 686  
[ ]aln.chm1_v21vVerkko_cen6.60000.10000.2.ref_0.log2025-01-27 13:02 686  
[ ]aln.chm1_v21vVerkko_cen6.60000.10000.3.ref_1.log2025-01-27 13:02 686  
[ ]aln.chm1_v21vVerkko_cen5.60000.10000.0.ref_1.log2025-01-27 13:02 689  
[ ]aln.chm1_v21vVerkko_cen5.60000.10000.2.ref_0.log2025-01-27 13:02 689  
[ ]aln.chm1_v21vVerkko_cen6.60000.10000.0.ref_1.log2025-01-27 13:02 686  
[ ]aln.chm13_chm1_cen22.60000.10000.1.ref_1.log2025-01-27 13:02 679  
[ ]aln_prep.chm13_chm1_cen22.60000.10000.ref_1.log2025-01-27 13:02 645  
[ ]sort_aln.chm13_chm1_cen22.60000.10000.log2025-01-27 13:02 0  
[ ]make_windows.chm13_chm1_cen22.60000.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen22.60000.2.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen22.60000.3.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen22.60000.0.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen22.60000.ref_1.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen22.60000.10000.2.ref_1.log2025-01-27 13:02 678  
[ ]aln_prep.chm13_chm1_cen22.60000.10000.ref_0.log2025-01-27 13:02 645  
[ ]aln.chm13_chm1_cen22.60000.10000.0.ref_0.log2025-01-27 13:02 679  
[ ]aln.chm13_chm1_cen22.60000.10000.1.ref_0.log2025-01-27 13:02 679  
[ ]split_windows.chm13_chm1_cen22.60000.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen22.60000.10000.2.ref_0.log2025-01-27 13:02 678  
[ ]aln.chm13_chm1_cen22.60000.10000.3.ref_0.log2025-01-27 13:02 679  
[ ]aln.chm13_chm1_cen22.60000.10000.0.ref_1.log2025-01-27 13:02 678  
[ ]aln.chm13_chm1_cen22.60000.10000.3.ref_1.log2025-01-27 13:02 681  
[ ]query_prep.chm1_v21vVerkko_cen9.60000.2.log2025-01-27 13:02 0  
[ ]split_windows.chm1_v21vVerkko_cen9.60000.log2025-01-27 13:02 0  
[ ]make_windows.chm1_v21vVerkko_cen9.60000.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen9.60000.ref_0.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen9.60000.ref_1.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen9.60000.10000.2.ref_0.log2025-01-27 13:02 686  
[ ]aln_prep.chm1_v21vVerkko_cen9.60000.10000.ref_1.log2025-01-27 13:02 653  
[ ]aln_prep.chm1_v21vVerkko_cen9.60000.10000.ref_0.log2025-01-27 13:02 653  
[ ]aln.chm1_v21vVerkko_cen9.60000.10000.2.ref_1.log2025-01-27 13:02 686  
[ ]query_prep.chm1_v21vVerkko_cen9.60000.0.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen9.60000.1.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen9.60000.3.log2025-01-27 13:02 0  
[ ]merge_aln.chm1_v21vVerkko_cen9.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm1_v21vVerkko_cen9.60000.10000.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen9.60000.10000.0.ref_0.log2025-01-27 13:02 686  
[ ]aln.chm1_v21vVerkko_cen9.60000.10000.0.ref_1.log2025-01-27 13:02 686  
[ ]aln.chm1_v21vVerkko_cen9.60000.10000.1.ref_1.log2025-01-27 13:02 686  
[ ]aln.chm1_v21vVerkko_cen9.60000.10000.1.ref_0.log2025-01-27 13:02 686  
[ ]aln.chm1_v21vVerkko_cen9.60000.10000.3.ref_1.log2025-01-27 13:02 686  
[ ]aln.chm1_v21vVerkko_cen9.60000.10000.3.ref_0.log2025-01-27 13:02 686  
[ ]aln_prep.chm1_v21vVerkko_cen13.60000.10000.ref_0.log2025-01-27 13:02 655  
[ ]split_windows.chm1_v21vVerkko_cen16.60000.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen17.60000.10000.2.ref_1.log2025-01-27 13:02 689  
[ ]split_windows.chm1_v21vVerkko_cen17.60000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm13_chm1_cen22.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm13_chm1_cen3.60000.10000.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen14.60000.10000.2.ref_1.log2025-01-27 13:02 678  
[ ]aln_prep.chm13_chm1_cen14.60000.10000.ref_1.log2025-01-27 13:02 645  
[ ]aln_prep.chm13_chm1_cen14.60000.10000.ref_0.log2025-01-27 13:02 645  
[ ]make_windows.chm13_chm1_cen14.60000.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen14.60000.ref_0.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen14.60000.2.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen14.60000.ref_1.log2025-01-27 13:02 0  
[ ]merge_aln.chm13_chm1_cen14.60000.10000.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen15.60000.10000.3.ref_0.log2025-01-27 13:02 688  
[ ]aln.chm13_chm1_cen14.60000.10000.2.ref_0.log2025-01-27 13:02 678  
[ ]split_windows.chm13_chm1_cen14.60000.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen14.60000.1.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen14.60000.0.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen14.60000.3.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen14.60000.10000.0.ref_0.log2025-01-27 13:02 678  
[ ]aln.chm13_chm1_cen14.60000.10000.0.ref_1.log2025-01-27 13:02 679  
[ ]aln.chm13_chm1_cen14.60000.10000.1.ref_1.log2025-01-27 13:02 679  
[ ]aln.chm13_chm1_cen14.60000.10000.3.ref_0.log2025-01-27 13:02 679  
[ ]aln.chm13_chm1_cen14.60000.10000.1.ref_0.log2025-01-27 13:02 679  
[ ]aln.chm13_chm1_cen14.60000.10000.3.ref_1.log2025-01-27 13:02 681  
[ ]sort_aln.chm13_chm1_cen20.60000.10000.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen16.60000.ref_0.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen15.60000.10000.3.ref_1.log2025-01-27 13:02 678  
[ ]query_prep.chm13_chm1_cen15.60000.3.log2025-01-27 13:02 0  
[ ]make_windows.chm13_chm1_cen15.60000.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen15.60000.ref_0.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen15.60000.ref_1.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen15.60000.0.log2025-01-27 13:02 0  
[ ]aln_prep.chm13_chm1_cen15.60000.10000.ref_0.log2025-01-27 13:02 645  
[ ]aln_prep.chm13_chm1_cen15.60000.10000.ref_1.log2025-01-27 13:02 645  
[ ]merge_list.chm13_chm1_cen15.60000.10000.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen15.60000.10000.0.ref_1.log2025-01-27 13:02 677  
[ ]split_windows.chm13_chm1_cen15.60000.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen15.60000.2.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen15.60000.1.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen15.60000.10000.3.ref_0.log2025-01-27 13:02 678  
[ ]aln.chm13_chm1_cen15.60000.10000.0.ref_0.log2025-01-27 13:02 678  
[ ]aln.chm13_chm1_cen15.60000.10000.2.ref_1.log2025-01-27 13:02 677  
[ ]aln.chm13_chm1_cen15.60000.10000.1.ref_0.log2025-01-27 13:02 678  
[ ]aln.chm13_chm1_cen15.60000.10000.1.ref_1.log2025-01-27 13:02 678  
[ ]aln.chm13_chm1_cen15.60000.10000.2.ref_0.log2025-01-27 13:02 677  
[ ]aln_prep.chm13_chm1_cen16.60000.10000.ref_0.log2025-01-27 13:02 645  
[ ]aln.chm13_chm1_cen16.60000.10000.1.ref_0.log2025-01-27 13:02 681  
[ ]make_windows.chm13_chm1_cen16.60000.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen16.60000.ref_1.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen16.60000.1.log2025-01-27 13:02 0  
[ ]merge_list.chm13_chm1_cen16.60000.10000.log2025-01-27 13:02 0  
[ ]aln_prep.chm13_chm1_cen16.60000.10000.ref_1.log2025-01-27 13:02 645  
[ ]aln.chm13_chm1_cen16.60000.10000.1.ref_1.log2025-01-27 13:02 681  
[ ]query_prep.chm13_chm1_cen16.60000.3.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen16.60000.0.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen16.60000.2.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen16.60000.10000.3.ref_0.log2025-01-27 13:02 681  
[ ]aln.chm13_chm1_cen16.60000.10000.0.ref_1.log2025-01-27 13:02 675  
[ ]aln.chm13_chm1_cen16.60000.10000.0.ref_0.log2025-01-27 13:02 675  
[ ]aln.chm13_chm1_cen16.60000.10000.2.ref_0.log2025-01-27 13:02 675  
[ ]aln.chm13_chm1_cen16.60000.10000.3.ref_1.log2025-01-27 13:02 681  
[ ]aln.chm13_chm1_cen16.60000.10000.2.ref_1.log2025-01-27 13:02 675  
[ ]identity.chm13_chm1_cen16.60000.10000.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen17.60000.ref_1.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm1_v21vVerkko_cen6.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm1_v21vVerkko_cen6.60000.10000.log2025-01-27 13:02 0  
[ ]merge_list.chm1_v21vVerkko_cen6.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm1_v21vVerkko_cen6.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm1_v21vVerkko_cen6.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm1_v21vVerkko_cen6.60000.10000.log2025-01-27 13:02 0  
[ ]merge_list.chm1_v21vVerkko_cen9.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm1_v21vVerkko_cen9.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm1_v21vVerkko_cen9.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm1_v21vVerkko_cen9.60000.10000.log2025-01-27 13:02 0  
[ ]make_windows.chm1_v21vVerkko_cen15.60000.log2025-01-27 13:02 0  
[ ]identity.chm13_chm1_cen9.60000.10000.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen13.60000.10000.3.ref_1.log2025-01-27 13:02 691  
[ ]aln_prep.chm1_v21vVerkko_cen17.60000.10000.ref_1.log2025-01-27 13:02 655  
[ ]merge_list.chm13_chm1_cen22.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm13_chm1_cen22.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm13_chm1_cen22.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm13_chm1_cen22.60000.10000.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen16.60000.10000.1.ref_0.log2025-01-27 13:02 689  
[ ]query_prep.chm1_v21vVerkko_cen15.60000.0.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm1_v21vVerkko_cen14.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm13_chm1_cen9.60000.10000.log2025-01-27 13:02 0  
[ ]merge_list.chm13_chm1_cen9.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm1_v21vVerkko_cen5.60000.10000.log2025-01-27 13:02 0  
[ ]merge_list.chm1_v21vVerkko_cen15.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm13_chm1_cen9.60000.10000.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen14.60000.10000.1.ref_1.log2025-01-27 13:02 689  
[ ]identity.chm1_v21vVerkko_cen5.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm1_v21vVerkko_cen5.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm1_v21vVerkko_cen5.60000.10000.log2025-01-27 13:02 0  
[ ]merge_list.chm13_chm1_cen11.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm13_chm1_cen9.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm13_chm1_cen7.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm1_v21vVerkko_cen5.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm13_chm1_cen11.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm13_chm1_cen11.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm13_chm1_cen11.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm13_chm1_cen11.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm13_chm1_cen11.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm13_chm1_cen7.60000.10000.log2025-01-27 13:02 0  
[ ]merge_list.chm13_chm1_cen7.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm13_chm1_cen7.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm13_chm1_cen7.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm1_v21vVerkko_cen19.60000.10000.log2025-01-27 13:02 0  
[ ]merge_list.chm1_v21vVerkko_cen19.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm1_v21vVerkko_cen19.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm1_v21vVerkko_cen19.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm1_v21vVerkko_cen19.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm13_chm1_cen20.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm1_v21vVerkko_cen19.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm13_chm1_cen17.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm13_chm1_cen15.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm13_chm1_cen15.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm13_chm1_cen15.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm13_chm1_cen15.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm13_chm1_cen15.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm13_chm1_cen3.60000.10000.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen13.60000.ref_0.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen13.60000.10000.1.ref_1.log2025-01-27 13:02 691  
[ ]aln.chm1_v21vVerkko_cen12.60000.10000.3.ref_1.log2025-01-27 13:02 690  
[ ]aln.chm1_v21vVerkko_cen13.60000.10000.0.ref_1.log2025-01-27 13:02 688  
[ ]query_prep.chm1_v21vVerkko_cen14.60000.0.log2025-01-27 13:02 0  
[ ]make_windows.chm1_v21vVerkko_cen14.60000.log2025-01-27 13:02 0  
[ ]merge_aln.chm13_chm1_cen16.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm13_chm1_cen16.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm13_chm1_cen16.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm13_chm1_cen16.60000.10000.log2025-01-27 13:02 0  
[ ]make_windows.chm13_chm1_cen17.60000.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen17.60000.10000.2.ref_1.log2025-01-27 13:02 679  
[ ]split_fa.chm13_chm1_cen17.60000.ref_0.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen17.60000.ref_1.log2025-01-27 13:02 0  
[ ]merge_list.chm13_chm1_cen17.60000.10000.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen17.60000.2.log2025-01-27 13:02 0  
[ ]aln_prep.chm13_chm1_cen17.60000.10000.ref_0.log2025-01-27 13:02 645  
[ ]aln_prep.chm13_chm1_cen17.60000.10000.ref_1.log2025-01-27 13:02 645  
[ ]split_windows.chm13_chm1_cen17.60000.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen17.60000.10000.3.ref_0.log2025-01-27 13:02 679  
[ ]query_prep.chm13_chm1_cen17.60000.3.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen17.60000.1.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen17.60000.0.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen17.60000.10000.2.ref_0.log2025-01-27 13:02 679  
[ ]aln.chm13_chm1_cen17.60000.10000.3.ref_1.log2025-01-27 13:02 679  
[ ]aln.chm13_chm1_cen17.60000.10000.0.ref_1.log2025-01-27 13:02 679  
[ ]aln.chm13_chm1_cen17.60000.10000.0.ref_0.log2025-01-27 13:02 681  
[ ]aln.chm13_chm1_cen17.60000.10000.1.ref_0.log2025-01-27 13:02 681  
[ ]aln.chm13_chm1_cen17.60000.10000.1.ref_1.log2025-01-27 13:02 679  
[ ]aln_prep.chm13_chm1_cen20.60000.10000.ref_1.log2025-01-27 13:02 645  
[ ]make_windows.chm13_chm1_cen20.60000.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen20.60000.ref_0.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen20.60000.ref_1.log2025-01-27 13:02 0  
[ ]merge_list.chm13_chm1_cen20.60000.10000.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen20.60000.1.log2025-01-27 13:02 0  
[ ]aln_prep.chm13_chm1_cen20.60000.10000.ref_0.log2025-01-27 13:02 645  
[ ]aln.chm13_chm1_cen20.60000.10000.0.ref_1.log2025-01-27 13:02 681  
[ ]split_windows.chm13_chm1_cen20.60000.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen20.60000.10000.1.ref_1.log2025-01-27 13:02 678  
[ ]query_prep.chm13_chm1_cen20.60000.0.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen20.60000.2.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen20.60000.3.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen20.60000.10000.1.ref_0.log2025-01-27 13:02 678  
[ ]aln.chm13_chm1_cen20.60000.10000.0.ref_0.log2025-01-27 13:02 681  
[ ]aln.chm13_chm1_cen20.60000.10000.2.ref_0.log2025-01-27 13:02 681  
[ ]aln.chm13_chm1_cen20.60000.10000.2.ref_1.log2025-01-27 13:02 681  
[ ]aln.chm13_chm1_cen20.60000.10000.3.ref_0.log2025-01-27 13:02 678  
[ ]aln.chm13_chm1_cen20.60000.10000.3.ref_1.log2025-01-27 13:02 678  
[ ]query_prep.chm1_v21vVerkko_cen17.60000.2.log2025-01-27 13:02 0  
[ ]merge_aln.chm1_v21vVerkko_cen14.60000.10000.log2025-01-27 13:02 0  
[ ]split_windows.chm1_v21vVerkko_cen13.60000.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen14.60000.1.log2025-01-27 13:02 0  
[ ]merge_list.chm13_chm1_cen14.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm13_chm1_cen14.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm13_chm1_cen14.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm13_chm1_cen14.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm13_chm1_cen14.60000.10000.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen13.60000.1.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen17.60000.1.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen14.60000.3.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen14.60000.10000.2.ref_1.log2025-01-27 13:02 688  
[ ]aln.chm1_v21vVerkko_cen14.60000.10000.0.ref_0.log2025-01-27 13:02 688  
[ ]aln.chm1_v21vVerkko_cen14.60000.10000.3.ref_0.log2025-01-27 13:02 689  
[ ]split_fa.chm1_v21vVerkko_cen15.60000.ref_0.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen12.60000.ref_0.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen12.60000.0.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen9.60000.1.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen9.60000.0.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen12.60000.3.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen9.60000.3.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen9.60000.ref_1.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen9.60000.2.log2025-01-27 13:02 0  
[ ]make_windows.chm13_chm1_cen9.60000.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen9.60000.ref_0.log2025-01-27 13:02 0  
[ ]split_windows.chm13_chm1_cen9.60000.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen12.60000.10000.ref_1.log2025-01-27 13:02 655  
[ ]aln_prep.chm13_chm1_cen9.60000.10000.ref_0.log2025-01-27 13:02 643  
[ ]aln_prep.chm13_chm1_cen9.60000.10000.ref_1.log2025-01-27 13:02 643  
[ ]aln.chm1_v21vVerkko_cen12.60000.10000.2.ref_0.log2025-01-27 13:02 690  
[ ]make_windows.chm1_v21vVerkko_cen12.60000.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen12.60000.ref_1.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen12.60000.10000.ref_0.log2025-01-27 13:02 655  
[ ]aln.chm1_v21vVerkko_cen12.60000.10000.2.ref_1.log2025-01-27 13:02 690  
[ ]split_windows.chm1_v21vVerkko_cen12.60000.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen12.60000.2.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen12.60000.1.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen12.60000.10000.0.ref_1.log2025-01-27 13:02 690  
[ ]aln.chm1_v21vVerkko_cen12.60000.10000.0.ref_0.log2025-01-27 13:02 690  
[ ]aln.chm1_v21vVerkko_cen12.60000.10000.1.ref_1.log2025-01-27 13:02 688  
[ ]merge_list.chm1_v21vVerkko_cen17.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm1_v21vVerkko_cen17.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm1_v21vVerkko_cen17.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm1_v21vVerkko_cen17.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm1_v21vVerkko_cen17.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm1_v21vVerkko_cen17.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm1_v21vVerkko_cen12.60000.10000.log2025-01-27 13:02 0  
[ ]merge_list.chm1_v21vVerkko_cen12.60000.10000.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen19.60000.10000.1.ref_0.log2025-01-27 13:02 693  
[ ]merge_aln.chm1_v21vVerkko_cen12.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm1_v21vVerkko_cen12.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm1_v21vVerkko_cen12.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm1_v21vVerkko_cen12.60000.10000.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen19.60000.2.log2025-01-27 13:02 0  
[ ]make_windows.chm1_v21vVerkko_cen19.60000.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen19.60000.ref_0.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen19.60000.1.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen19.60000.ref_1.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen19.60000.10000.ref_0.log2025-01-27 13:02 655  
[ ]aln_prep.chm1_v21vVerkko_cen19.60000.10000.ref_1.log2025-01-27 13:02 655  
[ ]aln.chm1_v21vVerkko_cen19.60000.10000.1.ref_1.log2025-01-27 13:02 693  
[ ]split_windows.chm1_v21vVerkko_cen19.60000.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen19.60000.3.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen19.60000.0.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen19.60000.10000.2.ref_0.log2025-01-27 13:02 692  
[ ]aln.chm1_v21vVerkko_cen19.60000.10000.0.ref_0.log2025-01-27 13:02 692  
[ ]aln.chm1_v21vVerkko_cen19.60000.10000.3.ref_0.log2025-01-27 13:02 693  
[ ]aln.chm1_v21vVerkko_cen19.60000.10000.3.ref_1.log2025-01-27 13:02 693  
[ ]aln.chm1_v21vVerkko_cen19.60000.10000.2.ref_1.log2025-01-27 13:02 692  
[ ]aln.chm1_v21vVerkko_cen19.60000.10000.0.ref_1.log2025-01-27 13:02 692  
[ ]merge_list.chm1_v21vVerkko_cen16.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm1_v21vVerkko_cen16.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm1_v21vVerkko_cen16.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm1_v21vVerkko_cen16.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm1_v21vVerkko_cen16.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm1_v21vVerkko_cen16.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm1_v21vVerkko_cen18.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm1_v21vVerkko_cen18.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm1_v21vVerkko_cen18.60000.10000.log2025-01-27 13:02 0  
[ ]merge_list.chm1_v21vVerkko_cen18.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm1_v21vVerkko_cen18.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm1_v21vVerkko_cen18.60000.10000.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen11.60000.1.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen11.60000.0.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen11.60000.2.log2025-01-27 13:02 0  
[ ]aln_prep.chm13_chm1_cen11.60000.10000.ref_0.log2025-01-27 13:02 645  
[ ]split_fa.chm13_chm1_cen11.60000.ref_0.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen11.60000.3.log2025-01-27 13:02 0  
[ ]make_windows.chm13_chm1_cen11.60000.log2025-01-27 13:02 0  
[ ]split_windows.chm13_chm1_cen11.60000.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen11.60000.ref_1.log2025-01-27 13:02 0  
[ ]aln_prep.chm13_chm1_cen11.60000.10000.ref_1.log2025-01-27 13:02 645  
[ ]query_prep.chm13_chm1_cen12.60000.2.log2025-01-27 13:02 0  
[ ]split_windows.chm13_chm1_cen12.60000.log2025-01-27 13:02 0  
[ ]aln_prep.chm13_chm1_cen12.60000.10000.ref_1.log2025-01-27 13:02 645  
[ ]make_windows.chm13_chm1_cen12.60000.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen12.60000.ref_0.log2025-01-27 13:02 0  
[ ]aln_prep.chm13_chm1_cen12.60000.10000.ref_0.log2025-01-27 13:02 645  
[ ]split_fa.chm13_chm1_cen12.60000.ref_1.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen12.60000.1.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen13.60000.10000.1.ref_1.log2025-01-27 13:02 679  
[ ]aln.chm13_chm1_cen12.60000.10000.3.ref_0.log2025-01-27 13:02 678  
[ ]aln.chm13_chm1_cen12.60000.10000.1.ref_1.log2025-01-27 13:02 678  
[ ]query_prep.chm13_chm1_cen12.60000.3.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen12.60000.0.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen12.60000.10000.1.ref_0.log2025-01-27 13:02 680  
[ ]aln.chm13_chm1_cen12.60000.10000.3.ref_1.log2025-01-27 13:02 678  
[ ]aln.chm13_chm1_cen12.60000.10000.2.ref_1.log2025-01-27 13:02 680  
[ ]aln.chm13_chm1_cen12.60000.10000.0.ref_0.log2025-01-27 13:02 680  
[ ]aln.chm13_chm1_cen12.60000.10000.2.ref_0.log2025-01-27 13:02 680  
[ ]aln.chm13_chm1_cen12.60000.10000.0.ref_1.log2025-01-27 13:02 680  
[ ]make_windows.chm13_chm1_cen13.60000.log2025-01-27 13:02 0  
[ ]aln_prep.chm13_chm1_cen13.60000.10000.ref_1.log2025-01-27 13:02 645  
[ ]aln_prep.chm13_chm1_cen13.60000.10000.ref_0.log2025-01-27 13:02 645  
[ ]split_windows.chm13_chm1_cen13.60000.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen13.60000.ref_0.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen13.60000.ref_1.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen13.60000.3.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen13.60000.10000.1.ref_0.log2025-01-27 13:02 681  
[ ]query_prep.chm13_chm1_cen13.60000.1.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen13.60000.0.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen13.60000.2.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen13.60000.10000.3.ref_0.log2025-01-27 13:02 681  
[ ]aln.chm13_chm1_cen13.60000.10000.3.ref_1.log2025-01-27 13:02 679  
[ ]aln.chm13_chm1_cen13.60000.10000.2.ref_1.log2025-01-27 13:02 678  
[ ]aln.chm13_chm1_cen13.60000.10000.0.ref_0.log2025-01-27 13:02 678  
[ ]aln.chm13_chm1_cen13.60000.10000.2.ref_0.log2025-01-27 13:02 679  
[ ]aln.chm13_chm1_cen13.60000.10000.0.ref_1.log2025-01-27 13:02 678  
[ ]merge_list.chm13_chm1_cen2.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm13_chm1_cen2.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm13_chm1_cen2.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm13_chm1_cen2.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm13_chm1_cen2.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm13_chm1_cen2.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm1_v21vVerkko_cen11.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm1_v21vVerkko_cen11.60000.10000.log2025-01-27 13:02 0  
[ ]merge_list.chm1_v21vVerkko_cen11.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm1_v21vVerkko_cen11.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm1_v21vVerkko_cen11.60000.10000.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen20.60000.10000.ref_0.log2025-01-27 13:02 655  
[ ]make_R_figures.chm1_v21vVerkko_cen11.60000.10000.log2025-01-27 13:02 0  
[ ]make_windows.chm1_v21vVerkko_cen20.60000.log2025-01-27 13:02 0  
[ ]sort_aln.chm1_v21vVerkko_cen20.60000.10000.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen20.60000.ref_0.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen20.60000.1.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen20.60000.ref_1.log2025-01-27 13:02 0  
[ ]split_windows.chm1_v21vVerkko_cen20.60000.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen20.60000.10000.ref_1.log2025-01-27 13:02 655  
[ ]aln.chm1_v21vVerkko_cen20.60000.10000.0.ref_0.log2025-01-27 13:02 689  
[ ]aln.chm1_v21vVerkko_cen20.60000.10000.1.ref_1.log2025-01-27 13:02 688  
[ ]query_prep.chm1_v21vVerkko_cen20.60000.0.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen20.60000.2.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen20.60000.3.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen20.60000.10000.0.ref_1.log2025-01-27 13:02 689  
[ ]aln.chm1_v21vVerkko_cen20.60000.10000.1.ref_0.log2025-01-27 13:02 688  
[ ]aln.chm1_v21vVerkko_cen20.60000.10000.2.ref_1.log2025-01-27 13:02 689  
[ ]aln.chm1_v21vVerkko_cen20.60000.10000.2.ref_0.log2025-01-27 13:02 689  
[ ]aln.chm1_v21vVerkko_cen20.60000.10000.3.ref_0.log2025-01-27 13:02 688  
[ ]aln.chm1_v21vVerkko_cen20.60000.10000.3.ref_1.log2025-01-27 13:02 688  
[ ]make_R_figures.chm1_v21vVerkko_cen20.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm1_v21vVerkko_cen20.60000.10000.log2025-01-27 13:02 0  
[ ]merge_list.chm1_v21vVerkko_cen20.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm1_v21vVerkko_cen20.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm1_v21vVerkko_cen20.60000.10000.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen5.80000.10000.2.ref_1.log2025-01-27 13:02 678  
[ ]aln_prep.chm13_chm1_cen5.80000.10000.ref_1.log2025-01-27 13:02 643  
[ ]make_windows.chm13_chm1_cen5.80000.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen5.80000.ref_0.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen5.80000.ref_1.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen5.80000.2.log2025-01-27 13:02 0  
[ ]aln_prep.chm13_chm1_cen5.80000.10000.ref_0.log2025-01-27 13:02 643  
[ ]split_windows.chm13_chm1_cen5.80000.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen5.80000.10000.1.ref_0.log2025-01-27 13:02 679  
[ ]query_prep.chm13_chm1_cen5.80000.1.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen5.80000.3.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen5.80000.0.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen5.80000.10000.1.ref_1.log2025-01-27 13:02 678  
[ ]aln.chm13_chm1_cen5.80000.10000.2.ref_0.log2025-01-27 13:02 678  
[ ]aln.chm13_chm1_cen5.80000.10000.0.ref_0.log2025-01-27 13:02 678  
[ ]aln.chm13_chm1_cen5.80000.10000.0.ref_1.log2025-01-27 13:02 678  
[ ]aln.chm13_chm1_cen5.80000.10000.3.ref_0.log2025-01-27 13:02 679  
[ ]aln.chm13_chm1_cen5.80000.10000.3.ref_1.log2025-01-27 13:02 677  
[ ]merge_list.chm13_chm1_cen5.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm13_chm1_cen5.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm13_chm1_cen5.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm13_chm1_cen5.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm13_chm1_cen5.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm13_chm1_cen5.60000.10000.log2025-01-27 13:02 0  
[ ]aln_prep.chm13_chm1_cen19.80000.10000.ref_1.log2025-01-27 13:02 645  
[ ]aln.chm13_chm1_cen19.80000.10000.2.ref_0.log2025-01-27 13:02 337  
[ ]make_windows.chm13_chm1_cen19.80000.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen19.80000.ref_0.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen19.80000.ref_1.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen19.80000.3.log2025-01-27 13:02 0  
[ ]aln_prep.chm13_chm1_cen19.80000.10000.ref_0.log2025-01-27 13:02 645  
[ ]aln.chm13_chm1_cen19.80000.10000.3.ref_0.log2025-01-27 13:02 337  
[ ]split_windows.chm13_chm1_cen19.80000.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen19.80000.0.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen19.80000.2.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen19.80000.1.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen19.80000.10000.3.ref_1.log2025-01-27 13:02 337  
[ ]aln.chm13_chm1_cen19.80000.10000.0.ref_0.log2025-01-27 13:02 337  
[ ]aln.chm13_chm1_cen19.80000.10000.2.ref_1.log2025-01-27 13:02 337  
[ ]aln.chm13_chm1_cen19.80000.10000.0.ref_1.log2025-01-27 13:02 337  
[ ]aln.chm13_chm1_cen19.80000.10000.1.ref_1.log2025-01-27 13:02 337  
[ ]aln.chm13_chm1_cen19.80000.10000.1.ref_0.log2025-01-27 13:02 337  
[ ]make_R_figures.chm13_chm1_cen18.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm13_chm1_cen18.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm13_chm1_cen18.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm13_chm1_cen18.60000.10000.log2025-01-27 13:02 0  
[ ]merge_list.chm13_chm1_cen18.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm13_chm1_cen18.60000.10000.log2025-01-27 13:02 0  
[ ]split_windows.chm13_chm1_cen18.80000.log2025-01-27 13:02 0  
[ ]make_windows.chm13_chm1_cen18.80000.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen18.80000.0.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen18.80000.ref_0.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen18.80000.ref_1.log2025-01-27 13:02 0  
[ ]aln_prep.chm13_chm1_cen18.80000.10000.ref_0.log2025-01-27 13:02 645  
[ ]aln_prep.chm13_chm1_cen18.80000.10000.ref_1.log2025-01-27 13:02 645  
[ ]aln.chm13_chm1_cen18.80000.10000.0.ref_1.log2025-01-27 13:02 337  
[ ]aln.chm13_chm1_cen18.80000.10000.0.ref_0.log2025-01-27 13:02 680  
[ ]query_prep.chm13_chm1_cen18.80000.3.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen18.80000.2.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen18.80000.1.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen18.80000.10000.3.ref_1.log2025-01-27 13:02 337  
[ ]aln.chm13_chm1_cen18.80000.10000.3.ref_0.log2025-01-27 13:02 337  
[ ]aln.chm13_chm1_cen18.80000.10000.1.ref_0.log2025-01-27 13:02 337  
[ ]aln.chm13_chm1_cen18.80000.10000.1.ref_1.log2025-01-27 13:02 337  
[ ]aln.chm13_chm1_cen18.80000.10000.2.ref_0.log2025-01-27 13:02 681  
[ ]aln.chm13_chm1_cen18.80000.10000.2.ref_1.log2025-01-27 13:02 680  
[ ]split_fa.chm13_chm1_cen1.60000.ref_0.log2025-01-27 13:02 0  
[ ]aln_prep.chm13_chm1_cen1.60000.10000.ref_0.log2025-01-27 13:02 643  
[ ]aln.chm13_chm1_cen1.60000.10000.0.ref_1.log2025-01-27 13:02 680  
[ ]split_windows.chm13_chm1_cen1.60000.log2025-01-27 13:02 0  
[ ]make_windows.chm13_chm1_cen1.60000.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen1.60000.0.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen1.60000.ref_1.log2025-01-27 13:02 0  
[ ]aln_prep.chm13_chm1_cen1.60000.10000.ref_1.log2025-01-27 13:02 643  
[ ]aln.chm13_chm1_cen1.60000.10000.3.ref_1.log2025-01-27 13:02 679  
[ ]aln.chm13_chm1_cen1.60000.10000.2.ref_0.log2025-01-27 13:02 680  
[ ]aln.chm13_chm1_cen1.60000.10000.1.ref_0.log2025-01-27 13:02 681  
[ ]query_prep.chm13_chm1_cen1.60000.1.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen1.60000.3.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen1.60000.2.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen1.60000.10000.1.ref_1.log2025-01-27 13:02 679  
[ ]aln.chm13_chm1_cen1.60000.10000.3.ref_0.log2025-01-27 13:02 681  
[ ]aln.chm13_chm1_cen1.60000.10000.0.ref_0.log2025-01-27 13:02 680  
[ ]aln.chm13_chm1_cen1.60000.10000.2.ref_1.log2025-01-27 13:02 680  
[ ]query_prep.chm13_chm1_cen2.60000.0.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen2.60000.10000.1.ref_0.log2025-01-27 13:02 675  
[ ]aln_prep.chm13_chm1_cen2.60000.10000.ref_0.log2025-01-27 13:02 643  
[ ]aln_prep.chm13_chm1_cen2.60000.10000.ref_1.log2025-01-27 13:02 643  
[ ]query_prep.chm13_chm1_cen2.60000.1.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen2.60000.ref_0.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen2.60000.ref_1.log2025-01-27 13:02 0  
[ ]make_windows.chm13_chm1_cen2.60000.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen2.60000.2.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen2.60000.10000.2.ref_1.log2025-01-27 13:02 678  
[ ]split_windows.chm13_chm1_cen2.60000.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen2.60000.3.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen2.60000.10000.1.ref_1.log2025-01-27 13:02 676  
[ ]aln.chm13_chm1_cen2.60000.10000.2.ref_0.log2025-01-27 13:02 676  
[ ]aln.chm13_chm1_cen2.60000.10000.3.ref_0.log2025-01-27 13:02 676  
[ ]aln.chm13_chm1_cen2.60000.10000.0.ref_0.log2025-01-27 13:02 676  
[ ]aln.chm13_chm1_cen2.60000.10000.0.ref_1.log2025-01-27 13:02 678  
[ ]aln.chm13_chm1_cen2.60000.10000.3.ref_1.log2025-01-27 13:02 676  
[ ]merge_aln.chm1_v21vVerkko_cen4.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm1_v21vVerkko_cen4.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm1_v21vVerkko_cen4.60000.10000.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen1.40000.10000.2.ref_0.log2025-01-27 13:02 337  
[ ]aln_prep.chm1_v21vVerkko_cen1.40000.10000.ref_1.log2025-01-27 13:02 653  
[ ]aln.chm1_v21vVerkko_cen1.40000.10000.1.ref_1.log2025-01-27 13:02 337  
[ ]make_windows.chm1_v21vVerkko_cen1.40000.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen1.40000.10000.ref_0.log2025-01-27 13:02 653  
[ ]split_fa.chm1_v21vVerkko_cen1.40000.ref_0.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen1.40000.ref_1.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen1.40000.2.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen1.40000.0.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen1.40000.1.log2025-01-27 13:02 0  
[ ]split_windows.chm1_v21vVerkko_cen1.40000.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen1.40000.3.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen1.40000.10000.1.ref_0.log2025-01-27 13:02 337  
[ ]aln.chm1_v21vVerkko_cen1.40000.10000.3.ref_1.log2025-01-27 13:02 337  
[ ]aln.chm1_v21vVerkko_cen1.40000.10000.2.ref_1.log2025-01-27 13:02 337  
[ ]aln.chm1_v21vVerkko_cen1.40000.10000.0.ref_0.log2025-01-27 13:02 337  
[ ]aln.chm1_v21vVerkko_cen1.40000.10000.0.ref_1.log2025-01-27 13:02 337  
[ ]aln.chm1_v21vVerkko_cen1.40000.10000.3.ref_0.log2025-01-27 13:02 337  
[ ]split_fa.chm1_v21vVerkko_cen3.60000.ref_0.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen3.60000.10000.2.ref_1.log2025-01-27 13:02 689  
[ ]split_fa.chm1_v21vVerkko_cen3.60000.ref_1.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen3.60000.10000.3.ref_1.log2025-01-27 13:02 690  
[ ]split_windows.chm1_v21vVerkko_cen3.60000.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen3.60000.10000.ref_1.log2025-01-27 13:02 653  
[ ]aln.chm1_v21vVerkko_cen3.60000.10000.0.ref_1.log2025-01-27 13:02 689  
[ ]aln.chm1_v21vVerkko_cen3.60000.10000.0.ref_0.log2025-01-27 13:02 689  
[ ]aln.chm1_v21vVerkko_cen3.60000.10000.3.ref_0.log2025-01-27 13:02 690  
[ ]aln.chm1_v21vVerkko_cen3.60000.10000.1.ref_0.log2025-01-27 13:02 690  
[ ]query_prep.chm1_v21vVerkko_cen3.60000.0.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen3.60000.3.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen3.60000.2.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen3.60000.1.log2025-01-27 13:02 0  
[ ]make_windows.chm1_v21vVerkko_cen3.60000.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen3.60000.10000.ref_0.log2025-01-27 13:02 653  
[ ]aln.chm1_v21vVerkko_cen3.60000.10000.1.ref_1.log2025-01-27 13:02 690  
[ ]aln.chm1_v21vVerkko_cen3.60000.10000.2.ref_0.log2025-01-27 13:02 689  
[ ]split_fa.chm1_v21vVerkko_cen4.60000.ref_0.log2025-01-27 13:02 0  
[ ]split_windows.chm1_v21vVerkko_cen4.60000.log2025-01-27 13:02 0  
[ ]make_windows.chm1_v21vVerkko_cen4.60000.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen4.60000.ref_1.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen4.60000.10000.ref_0.log2025-01-27 13:02 653  
[ ]aln_prep.chm1_v21vVerkko_cen4.60000.10000.ref_1.log2025-01-27 13:02 653  
[ ]aln.chm1_v21vVerkko_cen4.60000.10000.1.ref_1.log2025-01-27 13:02 688  
[ ]aln.chm1_v21vVerkko_cen4.60000.10000.1.ref_0.log2025-01-27 13:02 688  
[ ]merge_list.chm1_v21vVerkko_cen4.60000.10000.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen4.60000.1.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen4.60000.0.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen4.60000.2.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen4.60000.3.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen4.60000.10000.3.ref_0.log2025-01-27 13:02 688  
[ ]aln.chm1_v21vVerkko_cen4.60000.10000.0.ref_0.log2025-01-27 13:02 688  
[ ]aln.chm1_v21vVerkko_cen4.60000.10000.2.ref_0.log2025-01-27 13:02 688  
[ ]aln.chm1_v21vVerkko_cen4.60000.10000.0.ref_1.log2025-01-27 13:02 688  
[ ]aln.chm1_v21vVerkko_cen4.60000.10000.2.ref_1.log2025-01-27 13:02 688  
[ ]aln.chm1_v21vVerkko_cen4.60000.10000.3.ref_1.log2025-01-27 13:02 688  
[ ]pair_end_bed.chm1_v21vVerkko_cen4.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm1_v21vVerkko_cen4.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm1_v21vVerkko_cenX.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm1_v21vVerkko_cen21.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm1_v21vVerkko_cen21.60000.10000.log2025-01-27 13:02 0  
[ ]merge_list.chm1_v21vVerkko_cen21.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm1_v21vVerkko_cen21.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm1_v21vVerkko_cen21.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm1_v21vVerkko_cen21.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm13_chm1_cen19.60000.10000.log2025-01-27 13:02 0  
[ ]make_windows.chm13_chm1_cenX.60000.log2025-01-27 13:02 0  
[ ]aln_prep.chm13_chm1_cenX.60000.10000.ref_1.log2025-01-27 13:02 643  
[ ]aln.chm13_chm1_cenX.60000.10000.0.ref_0.log2025-01-27 13:02 676  
[ ]split_fa.chm13_chm1_cenX.60000.ref_0.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cenX.60000.ref_1.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cenX.60000.0.log2025-01-27 13:02 0  
[ ]aln_prep.chm13_chm1_cenX.60000.10000.ref_0.log2025-01-27 13:02 643  
[ ]aln.chm13_chm1_cenX.60000.10000.2.ref_1.log2025-01-27 13:02 676  
[ ]split_windows.chm13_chm1_cenX.60000.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cenX.60000.2.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cenX.60000.3.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cenX.60000.1.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cenX.60000.10000.2.ref_0.log2025-01-27 13:02 676  
[ ]aln.chm13_chm1_cenX.60000.10000.0.ref_1.log2025-01-27 13:02 676  
[ ]aln.chm13_chm1_cenX.60000.10000.1.ref_0.log2025-01-27 13:02 676  
[ ]aln.chm13_chm1_cenX.60000.10000.1.ref_1.log2025-01-27 13:02 676  
[ ]aln.chm13_chm1_cenX.60000.10000.3.ref_1.log2025-01-27 13:02 676  
[ ]aln.chm13_chm1_cenX.60000.10000.3.ref_0.log2025-01-27 13:02 676  
[ ]split_fa.chm1_v21vVerkko_cen2.40000.ref_0.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen2.40000.3.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen2.40000.10000.1.ref_1.log2025-01-27 13:02 685  
[ ]aln_prep.chm1_v21vVerkko_cen2.40000.10000.ref_1.log2025-01-27 13:02 653  
[ ]query_prep.chm1_v21vVerkko_cen2.40000.0.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen2.40000.ref_1.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen2.40000.10000.ref_0.log2025-01-27 13:02 653  
[ ]make_windows.chm1_v21vVerkko_cen2.40000.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen2.40000.2.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen2.40000.1.log2025-01-27 13:02 0  
[ ]sort_aln.chm1_v21vVerkko_cen2.40000.10000.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen2.40000.10000.3.ref_0.log2025-01-27 13:02 685  
[ ]aln.chm1_v21vVerkko_cen2.40000.10000.2.ref_1.log2025-01-27 13:02 686  
[ ]aln.chm1_v21vVerkko_cen2.40000.10000.0.ref_0.log2025-01-27 13:02 686  
[ ]split_windows.chm1_v21vVerkko_cen2.40000.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen2.40000.10000.2.ref_0.log2025-01-27 13:02 686  
[ ]aln.chm1_v21vVerkko_cen2.40000.10000.0.ref_1.log2025-01-27 13:02 686  
[ ]aln.chm1_v21vVerkko_cen2.40000.10000.1.ref_0.log2025-01-27 13:02 685  
[ ]aln.chm1_v21vVerkko_cen2.40000.10000.3.ref_1.log2025-01-27 13:02 685  
[ ]make_R_figures.chm13_chm1_cen19.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm1_v21vVerkko_cen2.40000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm13_chm1_cenX.60000.10000.log2025-01-27 13:02 0  
[ ]merge_list.chm13_chm1_cenX.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm13_chm1_cenX.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm13_chm1_cenX.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm13_chm1_cenX.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm13_chm1_cenX.60000.10000.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen3.40000.10000.ref_0.log2025-01-27 13:02 653  
[ ]aln.chm1_v21vVerkko_cen2.60000.10000.0.ref_0.log2025-01-27 13:02 686  
[ ]query_prep.chm1_v21vVerkko_cen2.60000.2.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen3.40000.10000.2.ref_0.log2025-01-27 13:02 337  
[ ]make_windows.chm1_v21vVerkko_cen3.40000.log2025-01-27 13:02 0  
[ ]make_windows.chm1_v21vVerkko_cen2.60000.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen3.40000.0.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen3.40000.1.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen3.40000.10000.3.ref_0.log2025-01-27 13:02 337  
[ ]query_prep.chm1_v21vVerkko_cen3.40000.2.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen3.40000.ref_0.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen3.40000.10000.2.ref_1.log2025-01-27 13:02 337  
[ ]split_fa.chm1_v21vVerkko_cen3.40000.ref_1.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen3.40000.10000.ref_1.log2025-01-27 13:02 653  
[ ]aln.chm1_v21vVerkko_cen1.60000.10000.2.ref_0.log2025-01-27 13:02 690  
[ ]query_prep.chm1_v21vVerkko_cen2.60000.3.log2025-01-27 13:02 0  
[ ]split_windows.chm1_v21vVerkko_cen3.40000.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen3.40000.3.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen3.40000.10000.3.ref_1.log2025-01-27 13:02 337  
[ ]aln.chm1_v21vVerkko_cen3.40000.10000.1.ref_1.log2025-01-27 13:02 337  
[ ]aln.chm1_v21vVerkko_cen2.60000.10000.3.ref_0.log2025-01-27 13:02 686  
[ ]aln.chm1_v21vVerkko_cen2.60000.10000.1.ref_1.log2025-01-27 13:02 686  
[ ]query_prep.chm1_v21vVerkko_cen2.60000.1.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen3.40000.10000.0.ref_1.log2025-01-27 13:02 337  
[ ]aln.chm1_v21vVerkko_cen3.40000.10000.1.ref_0.log2025-01-27 13:02 337  
[ ]aln.chm1_v21vVerkko_cen3.40000.10000.0.ref_0.log2025-01-27 13:02 337  
[ ]merge_list.chm1_v21vVerkko_cen2.40000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm1_v21vVerkko_cen2.40000.10000.log2025-01-27 13:02 0  
[ ]identity.chm1_v21vVerkko_cen2.40000.10000.log2025-01-27 13:02 0  
[ ]split_windows.chm1_v21vVerkko_cen2.60000.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen2.60000.10000.ref_0.log2025-01-27 13:02 653  
[ ]split_windows.chm1_v21vVerkko_cen1.60000.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen1.60000.10000.3.ref_1.log2025-01-27 13:02 690  
[ ]merge_aln.chm1_v21vVerkko_cen2.60000.10000.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen1.60000.10000.0.ref_0.log2025-01-27 13:02 690  
[ ]aln_prep.chm1_v21vVerkko_cen2.60000.10000.ref_1.log2025-01-27 13:02 653  
[ ]make_R_figures.chm1_v21vVerkko_cen2.40000.10000.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen1.60000.10000.1.ref_1.log2025-01-27 13:02 690  
[ ]aln.chm1_v21vVerkko_cen2.60000.10000.2.ref_0.log2025-01-27 13:02 686  
[ ]split_fa.chm1_v21vVerkko_cen1.60000.ref_0.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen2.60000.10000.3.ref_1.log2025-01-27 13:02 686  
[ ]make_windows.chm1_v21vVerkko_cen1.60000.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen2.60000.10000.0.ref_1.log2025-01-27 13:02 686  
[ ]query_prep.chm1_v21vVerkko_cen1.60000.0.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen1.60000.3.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen1.60000.10000.ref_1.log2025-01-27 13:02 653  
[ ]merge_list.chm1_v21vVerkko_cen1.60000.10000.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen1.60000.10000.3.ref_0.log2025-01-27 13:02 690  
[ ]aln_prep.chm1_v21vVerkko_cen1.60000.10000.ref_0.log2025-01-27 13:02 653  
[ ]aln.chm1_v21vVerkko_cen1.60000.10000.0.ref_1.log2025-01-27 13:02 690  
[ ]aln.chm1_v21vVerkko_cen1.60000.10000.1.ref_0.log2025-01-27 13:02 690  
[ ]aln.chm1_v21vVerkko_cen2.60000.10000.1.ref_0.log2025-01-27 13:02 686  
[ ]query_prep.chm1_v21vVerkko_cen1.60000.1.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen1.60000.ref_1.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen2.60000.0.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen2.60000.ref_0.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen2.60000.ref_1.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen2.60000.10000.2.ref_1.log2025-01-27 13:02 686  
[ ]aln.chm1_v21vVerkko_cen1.60000.10000.2.ref_1.log2025-01-27 13:02 690  
[ ]query_prep.chm1_v21vVerkko_cen1.60000.2.log2025-01-27 13:02 0  
[ ]make_windows.chm1_v21vVerkko_cen10.60000.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen10.60000.10000.ref_0.log2025-01-27 13:02 655  
[ ]split_windows.chm1_v21vVerkko_cen10.60000.log2025-01-27 13:02 0  
[ ]identity.chm1_v21vVerkko_cen2.60000.10000.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen10.60000.ref_0.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen10.60000.ref_1.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen10.60000.3.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen10.60000.10000.ref_1.log2025-01-27 13:02 655  
[ ]merge_aln.chm1_v21vVerkko_cen10.60000.10000.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen10.60000.10000.3.ref_1.log2025-01-27 13:02 690  
[ ]pair_end_bed.chm1_v21vVerkko_cen10.60000.10000.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen10.60000.10000.3.ref_0.log2025-01-27 13:02 688  
[ ]query_prep.chm1_v21vVerkko_cen10.60000.0.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen10.60000.2.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen10.60000.1.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen10.60000.10000.2.ref_0.log2025-01-27 13:02 688  
[ ]aln.chm1_v21vVerkko_cen10.60000.10000.1.ref_1.log2025-01-27 13:02 688  
[ ]aln.chm1_v21vVerkko_cen10.60000.10000.2.ref_1.log2025-01-27 13:02 688  
[ ]aln.chm1_v21vVerkko_cen10.60000.10000.0.ref_0.log2025-01-27 13:02 688  
[ ]aln.chm1_v21vVerkko_cen10.60000.10000.1.ref_0.log2025-01-27 13:02 688  
[ ]aln.chm1_v21vVerkko_cen10.60000.10000.0.ref_1.log2025-01-27 13:02 688  
[ ]make_windows.chm1_v21vVerkko_cen22.60000.log2025-01-27 13:02 0  
[ ]split_windows.chm1_v21vVerkko_cenX.60000.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen22.60000.10000.ref_1.log2025-01-27 13:02 655  
[ ]aln_prep.chm1_v21vVerkko_cen22.60000.10000.ref_0.log2025-01-27 13:02 655  
[ ]aln.chm1_v21vVerkko_cen22.60000.10000.1.ref_1.log2025-01-27 13:02 689  
[ ]split_fa.chm1_v21vVerkko_cen22.60000.ref_0.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen22.60000.ref_1.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen22.60000.1.log2025-01-27 13:02 0  
[ ]merge_list.chm1_v21vVerkko_cen22.60000.10000.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen22.60000.10000.1.ref_0.log2025-01-27 13:02 689  
[ ]split_windows.chm1_v21vVerkko_cen22.60000.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen22.60000.3.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen22.60000.2.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen22.60000.0.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen22.60000.10000.2.ref_0.log2025-01-27 13:02 689  
[ ]aln.chm1_v21vVerkko_cen22.60000.10000.0.ref_0.log2025-01-27 13:02 688  
[ ]aln.chm1_v21vVerkko_cen22.60000.10000.3.ref_0.log2025-01-27 13:02 689  
[ ]aln.chm1_v21vVerkko_cen22.60000.10000.3.ref_1.log2025-01-27 13:02 689  
[ ]aln.chm1_v21vVerkko_cen22.60000.10000.0.ref_1.log2025-01-27 13:02 688  
[ ]aln.chm1_v21vVerkko_cen22.60000.10000.2.ref_1.log2025-01-27 13:02 688  
[ ]merge_list.chm1_v21vVerkko_cen2.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm1_v21vVerkko_cen2.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm1_v21vVerkko_cen2.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm1_v21vVerkko_cen2.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm1_v21vVerkko_cen22.60000.10000.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen8.60000.10000.1.ref_1.log2025-01-27 13:02 676  
[ ]aln.chm13_chm1_cen8.60000.10000.3.ref_0.log2025-01-27 13:02 676  
[ ]aln.chm13_chm1_cen8.60000.10000.0.ref_0.log2025-01-27 13:02 676  
[ ]aln.chm13_chm1_cen8.60000.10000.2.ref_1.log2025-01-27 13:02 676  
[ ]aln.chm13_chm1_cen8.60000.10000.3.ref_1.log2025-01-27 13:02 676  
[ ]aln.chm13_chm1_cen8.60000.10000.0.ref_1.log2025-01-27 13:02 676  
[ ]aln.chm13_chm1_cen8.60000.10000.2.ref_0.log2025-01-27 13:02 676  
[ ]aln.chm13_chm1_cen8.60000.10000.1.ref_0.log2025-01-27 13:02 676  
[ ]merge_list.chm1_v21vVerkko_cenX.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm1_v21vVerkko_cen7.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm1_v21vVerkko_cen7.60000.10000.log2025-01-27 13:02 0  
[ ]merge_list.chm1_v21vVerkko_cen7.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm1_v21vVerkko_cen7.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm1_v21vVerkko_cen1.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm1_v21vVerkko_cen1.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm1_v21vVerkko_cen1.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm1_v21vVerkko_cen1.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm1_v21vVerkko_cen1.60000.10000.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen11.60000.0.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen11.60000.10000.ref_0.log2025-01-27 13:02 655  
[ ]make_R_figures.chm1_v21vVerkko_cen7.60000.10000.log2025-01-27 13:02 0  
[ ]make_windows.chm1_v21vVerkko_cen11.60000.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen11.60000.3.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen11.60000.ref_0.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen11.60000.ref_1.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen11.60000.10000.3.ref_0.log2025-01-27 13:02 693  
[ ]aln_prep.chm1_v21vVerkko_cen11.60000.10000.ref_1.log2025-01-27 13:02 655  
[ ]aln.chm1_v21vVerkko_cen11.60000.10000.3.ref_1.log2025-01-27 13:02 693  
[ ]split_windows.chm1_v21vVerkko_cen11.60000.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen11.60000.2.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen11.60000.1.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen11.60000.10000.1.ref_1.log2025-01-27 13:02 693  
[ ]aln.chm1_v21vVerkko_cen11.60000.10000.2.ref_0.log2025-01-27 13:02 691  
[ ]aln.chm1_v21vVerkko_cen11.60000.10000.0.ref_0.log2025-01-27 13:02 691  
[ ]aln.chm1_v21vVerkko_cen11.60000.10000.1.ref_0.log2025-01-27 13:02 693  
[ ]aln.chm1_v21vVerkko_cen11.60000.10000.2.ref_1.log2025-01-27 13:02 691  
[ ]aln.chm1_v21vVerkko_cen11.60000.10000.0.ref_1.log2025-01-27 13:02 692  
[ ]merge_aln.chm1_v21vVerkko_cen22.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm1_v21vVerkko_cen22.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm1_v21vVerkko_cen22.60000.10000.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cenX.60000.10000.ref_0.log2025-01-27 13:02 653  
[ ]make_R_figures.chm1_v21vVerkko_cen22.60000.10000.log2025-01-27 13:02 0  
[ ]make_windows.chm1_v21vVerkko_cenX.60000.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cenX.60000.ref_0.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cenX.60000.ref_1.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cenX.60000.2.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cenX.60000.10000.ref_1.log2025-01-27 13:02 653  
[ ]aln.chm1_v21vVerkko_cenX.60000.10000.2.ref_0.log2025-01-27 13:02 686  
[ ]aln.chm1_v21vVerkko_cenX.60000.10000.2.ref_1.log2025-01-27 13:02 686  
[ ]query_prep.chm1_v21vVerkko_cenX.60000.0.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cenX.60000.1.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cenX.60000.3.log2025-01-27 13:02 0  
[ ]merge_aln.chm1_v21vVerkko_cenX.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm1_v21vVerkko_cenX.60000.10000.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cenX.60000.10000.0.ref_0.log2025-01-27 13:02 686  
[ ]aln.chm1_v21vVerkko_cenX.60000.10000.1.ref_1.log2025-01-27 13:02 686  
[ ]aln.chm1_v21vVerkko_cenX.60000.10000.0.ref_1.log2025-01-27 13:02 686  
[ ]aln.chm1_v21vVerkko_cenX.60000.10000.1.ref_0.log2025-01-27 13:02 686  
[ ]aln.chm1_v21vVerkko_cenX.60000.10000.3.ref_0.log2025-01-27 13:02 686  
[ ]aln.chm1_v21vVerkko_cenX.60000.10000.3.ref_1.log2025-01-27 13:02 686  
[ ]identity.chm1_v21vVerkko_cen10.60000.10000.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen21.60000.ref_0.log2025-01-27 13:02 0  
[ ]merge_list.chm1_v21vVerkko_cen10.60000.10000.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen21.60000.10000.ref_1.log2025-01-27 13:02 655  
[ ]sort_aln.chm1_v21vVerkko_cen10.60000.10000.log2025-01-27 13:02 0  
[ ]make_windows.chm1_v21vVerkko_cen21.60000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm1_v21vVerkko_cen10.60000.10000.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen21.60000.ref_1.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen21.60000.10000.ref_0.log2025-01-27 13:02 655  
[ ]aln.chm1_v21vVerkko_cen21.60000.10000.1.ref_1.log2025-01-27 13:02 688  
[ ]split_windows.chm1_v21vVerkko_cen21.60000.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen21.60000.10000.1.ref_0.log2025-01-27 13:02 688  
[ ]query_prep.chm1_v21vVerkko_cen21.60000.1.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen21.60000.3.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen21.60000.0.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen21.60000.2.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen21.60000.10000.2.ref_1.log2025-01-27 13:02 685  
[ ]aln.chm1_v21vVerkko_cen21.60000.10000.3.ref_0.log2025-01-27 13:02 688  
[ ]aln.chm1_v21vVerkko_cen21.60000.10000.2.ref_0.log2025-01-27 13:02 685  
[ ]aln.chm1_v21vVerkko_cen21.60000.10000.3.ref_1.log2025-01-27 13:02 688  
[ ]aln.chm1_v21vVerkko_cen21.60000.10000.0.ref_1.log2025-01-27 13:02 685  
[ ]aln.chm1_v21vVerkko_cen21.60000.10000.0.ref_0.log2025-01-27 13:02 685  
[ ]pair_end_bed.chm1_v21vVerkko_cenX.60000.10000.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen7.60000.10000.ref_0.log2025-01-27 13:02 653  
[ ]aln.chm1_v21vVerkko_cen7.60000.10000.1.ref_1.log2025-01-27 13:02 690  
[ ]make_windows.chm1_v21vVerkko_cen7.60000.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen7.60000.ref_0.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen7.60000.1.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen7.60000.ref_1.log2025-01-27 13:02 0  
[ ]merge_aln.chm1_v21vVerkko_cen7.60000.10000.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen7.60000.10000.ref_1.log2025-01-27 13:02 653  
[ ]aln.chm1_v21vVerkko_cen7.60000.10000.2.ref_0.log2025-01-27 13:02 689  
[ ]split_windows.chm1_v21vVerkko_cen7.60000.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen7.60000.2.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen7.60000.0.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen7.60000.3.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen7.60000.10000.2.ref_1.log2025-01-27 13:02 689  
[ ]aln.chm1_v21vVerkko_cen7.60000.10000.1.ref_0.log2025-01-27 13:02 690  
[ ]aln.chm1_v21vVerkko_cen7.60000.10000.0.ref_1.log2025-01-27 13:02 689  
[ ]aln.chm1_v21vVerkko_cen7.60000.10000.3.ref_0.log2025-01-27 13:02 690  
[ ]aln.chm1_v21vVerkko_cen7.60000.10000.3.ref_1.log2025-01-27 13:02 691  
[ ]aln.chm1_v21vVerkko_cen7.60000.10000.0.ref_0.log2025-01-27 13:02 689  
[ ]make_windows.chm1_v21vVerkko_cen8.60000.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen8.60000.ref_0.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen8.60000.2.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen8.60000.ref_1.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen8.60000.10000.ref_0.log2025-01-27 13:02 653  
[ ]sort_aln.chm1_v21vVerkko_cen8.60000.10000.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen8.60000.10000.ref_1.log2025-01-27 13:02 653  
[ ]aln.chm1_v21vVerkko_cen8.60000.10000.2.ref_0.log2025-01-27 13:02 686  
[ ]split_windows.chm1_v21vVerkko_cen8.60000.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen8.60000.10000.2.ref_1.log2025-01-27 13:02 686  
[ ]query_prep.chm1_v21vVerkko_cen8.60000.1.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen8.60000.0.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen8.60000.3.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen8.60000.10000.1.ref_1.log2025-01-27 13:02 686  
[ ]aln.chm1_v21vVerkko_cen8.60000.10000.0.ref_0.log2025-01-27 13:02 686  
[ ]aln.chm1_v21vVerkko_cen8.60000.10000.3.ref_0.log2025-01-27 13:02 686  
[ ]aln.chm1_v21vVerkko_cen8.60000.10000.1.ref_0.log2025-01-27 13:02 686  
[ ]aln.chm1_v21vVerkko_cen8.60000.10000.0.ref_1.log2025-01-27 13:02 686  
[ ]aln.chm1_v21vVerkko_cen8.60000.10000.3.ref_1.log2025-01-27 13:02 686  
[ ]sort_aln.chm1_v21vVerkko_cenX.60000.10000.log2025-01-27 13:02 0  
[ ]merge_list.chm1_v21vVerkko_cen8.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm1_v21vVerkko_cen8.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm1_v21vVerkko_cen8.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm1_v21vVerkko_cen8.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm1_v21vVerkko_cen8.60000.10000.log2025-01-27 13:02 0  
[ ]merge_list.chm1_v21vVerkko_cen13.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm1_v21vVerkko_cen13.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm1_v21vVerkko_cen13.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm1_v21vVerkko_cen13.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm1_v21vVerkko_cen13.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm1_v21vVerkko_cen13.60000.10000.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen18.60000.ref_0.log2025-01-27 13:02 0  
[ ]split_windows.chm1_v21vVerkko_cen18.60000.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen18.60000.10000.ref_0.log2025-01-27 13:02 655  
[ ]make_windows.chm1_v21vVerkko_cen18.60000.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen18.60000.2.log2025-01-27 13:02 0  
[ ]split_fa.chm1_v21vVerkko_cen18.60000.ref_1.log2025-01-27 13:02 0  
[ ]aln_prep.chm1_v21vVerkko_cen18.60000.10000.ref_1.log2025-01-27 13:02 655  
[ ]aln.chm1_v21vVerkko_cen18.60000.10000.2.ref_1.log2025-01-27 13:02 691  
[ ]aln.chm1_v21vVerkko_cen18.60000.10000.2.ref_0.log2025-01-27 13:02 691  
[ ]query_prep.chm1_v21vVerkko_cen18.60000.3.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen18.60000.1.log2025-01-27 13:02 0  
[ ]query_prep.chm1_v21vVerkko_cen18.60000.0.log2025-01-27 13:02 0  
[ ]aln.chm1_v21vVerkko_cen18.60000.10000.1.ref_1.log2025-01-27 13:02 691  
[ ]aln.chm1_v21vVerkko_cen18.60000.10000.1.ref_0.log2025-01-27 13:02 691  
[ ]aln.chm1_v21vVerkko_cen18.60000.10000.3.ref_1.log2025-01-27 13:02 691  
[ ]aln.chm1_v21vVerkko_cen18.60000.10000.0.ref_1.log2025-01-27 13:02 691  
[ ]aln.chm1_v21vVerkko_cen18.60000.10000.3.ref_0.log2025-01-27 13:02 691  
[ ]aln.chm1_v21vVerkko_cen18.60000.10000.0.ref_0.log2025-01-27 13:02 691  
[ ]merge_list.chm13_chm1_cen13.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm13_chm1_cen13.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm13_chm1_cen13.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm13_chm1_cen13.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm13_chm1_cen13.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm13_chm1_cen1.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm13_chm1_cen13.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm13_chm1_cen12.60000.10000.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen20_justHOR.60000.0.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm13_chm1_cen12.60000.10000.log2025-01-27 13:02 0  
[ ]identity.chm13_chm1_cen12.60000.10000.log2025-01-27 13:02 0  
[ ]merge_list.chm13_chm1_cen12.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm13_chm1_cen12.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm13_chm1_cen12.60000.10000.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen20_justHOR.60000.3.log2025-01-27 13:02 0  
[ ]aln_prep.chm13_chm1_cen20_justHOR.60000.10000.ref_1.log2025-01-27 13:02 660  
[ ]split_fa.chm13_chm1_cen20_justHOR.60000.ref_1.log2025-01-27 13:02 0  
[ ]split_windows.chm13_chm1_cen20_justHOR.60000.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen20_justHOR.60000.ref_0.log2025-01-27 13:02 0  
[ ]make_windows.chm13_chm1_cen20_justHOR.60000.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen20_justHOR.60000.10000.2.ref_0.log2025-01-27 13:02 693  
[ ]aln_prep.chm13_chm1_cen20_justHOR.60000.10000.ref_0.log2025-01-27 13:02 660  
[ ]aln.chm13_chm1_cen20_justHOR.60000.10000.0.ref_0.log2025-01-27 13:02 693  
[ ]query_prep.chm13_chm1_cen20_justHOR.60000.2.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen20_justHOR.60000.1.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen20_justHOR.60000.10000.3.ref_0.log2025-01-27 13:02 693  
[ ]aln.chm13_chm1_cen20_justHOR.60000.10000.3.ref_1.log2025-01-27 13:02 693  
[ ]aln.chm13_chm1_cen20_justHOR.60000.10000.2.ref_1.log2025-01-27 13:02 693  
[ ]aln.chm13_chm1_cen20_justHOR.60000.10000.0.ref_1.log2025-01-27 13:02 693  
[ ]aln.chm13_chm1_cen20_justHOR.60000.10000.1.ref_1.log2025-01-27 13:02 693  
[ ]aln.chm13_chm1_cen20_justHOR.60000.10000.1.ref_0.log2025-01-27 13:02 693  
[ ]merge_aln.chm13_chm1_cen1.60000.10000.log2025-01-27 13:02 0  
[ ]merge_list.chm13_chm1_cen1.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm13_chm1_cen1.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm13_chm1_cen1.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm13_chm1_cen1.60000.10000.log2025-01-27 13:02 0  
[ ]make_windows.chm13_chm1_cen21.60000.log2025-01-27 13:02 0  
[ ]merge_list.chm13_chm1_cen21.60000.10000.log2025-01-27 13:02 0  
[ ]aln_prep.chm13_chm1_cen21.60000.10000.ref_1.log2025-01-27 13:02 645  
[ ]split_fa.chm13_chm1_cen21.60000.ref_0.log2025-01-27 13:02 0  
[ ]split_fa.chm13_chm1_cen21.60000.ref_1.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen21.60000.0.log2025-01-27 13:02 0  
[ ]aln_prep.chm13_chm1_cen21.60000.10000.ref_0.log2025-01-27 13:02 645  
[ ]aln.chm13_chm1_cen21.60000.10000.0.ref_0.log2025-01-27 13:02 675  
[ ]split_windows.chm13_chm1_cen21.60000.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen21.60000.10000.0.ref_1.log2025-01-27 13:02 675  
[ ]query_prep.chm13_chm1_cen21.60000.1.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen21.60000.2.log2025-01-27 13:02 0  
[ ]query_prep.chm13_chm1_cen21.60000.3.log2025-01-27 13:02 0  
[ ]aln.chm13_chm1_cen21.60000.10000.1.ref_1.log2025-01-27 13:02 677  
[ ]aln.chm13_chm1_cen21.60000.10000.3.ref_0.log2025-01-27 13:02 677  
[ ]aln.chm13_chm1_cen21.60000.10000.1.ref_0.log2025-01-27 13:02 678  
[ ]aln.chm13_chm1_cen21.60000.10000.2.ref_1.log2025-01-27 13:02 675  
[ ]aln.chm13_chm1_cen21.60000.10000.2.ref_0.log2025-01-27 13:02 675  
[ ]aln.chm13_chm1_cen21.60000.10000.3.ref_1.log2025-01-27 13:02 675  
[ ]identity.chm13_chm1_cen21.60000.10000.log2025-01-27 13:02 0  
[ ]merge_aln.chm13_chm1_cen21.60000.10000.log2025-01-27 13:02 0  
[ ]sort_aln.chm13_chm1_cen21.60000.10000.log2025-01-27 13:02 0  
[ ]pair_end_bed.chm13_chm1_cen21.60000.10000.log2025-01-27 13:02 0  
[ ]make_R_figures.chm13_chm1_cen21.60000.10000.log2025-01-27 13:02 0