001237F.150400.271700 collpase from CHM1
region: 001237F.150400.271700
copies: 20
number of assemblies: 15
number of CC groups: 38
Regions in reference:
chr21:10400712-10789221[94.580,90.938,97.183,93.157,90.938,95.970,96.059][94.580,90.938,96.586,96.283,90.938,98.077,97.608] chr13:19311998-19618559[91.390,94.518,91.073,90.146,89.769,93.215,91.925][91.390,94.518,95.043,90.146,89.769,95.597,91.288] chrY:26392018-26707339[94.407,90.010,90.208,90.587,97.045,94.859,95.455,95.455,97.130,91.141][95.199,90.010,90.208,90.587,97.046,95.365,95.455,96.070,96.625,95.628]
chr13:24843238-25081771[89.711,91.915,95.171,95.761,91.702,92.687,93.498][89.711,91.915,95.171,95.761,95.681,92.687,95.232] chr15:19832928-20066990[92.609,93.271][98.188,96.069] chr22:38258245-38484096[96.567][96.721]
chr13:24478980-24704212[91.702,89.711,93.860,94.095,93.215,94.518,91.925,96.956,90.531][91.702,89.711,93.860,94.095,93.215,94.518,91.925,96.955,90.531] chr7:152104334-152320829[96.689,96.504][96.689,96.610] chr13:52118259-52337355[92.449,93.174,93.643,93.174,91.112,92.039,96.448][92.936,93.174,93.643,93.174,97.734,92.039,98.616]
chr22:10461075-10688268[99.367][99.134] chr2:91943638-92154276[96.238][97.461] chr2:94173680-94384181[97.107][97.856]
chr9:40551543-40762225[98.767][99.319] chr9:64675104-64885776[99.137][99.121] chr18:15098265-15308765[95.198][97.336]
chr16:32711883-32922775[99.429][99.538] chr2:90226444-90436898[89.721][97.597] chr9:43180634-43392460[90.617,99.935,98.191,98.246][92.260,97.848,97.968,98.203]
chr7:65410169-65620496[93.155,91.925,92.260,92.922][93.155,91.925,92.260,98.759] chr13:40716450-40928795[90.010,90.146,89.791,90.456,91.073,89.769,91.969,90.990,91.694][90.010,90.146,90.427,90.456,91.143,89.769,90.294,91.129,91.794]
Group Stats:
CC_ID Status numOfPSVs reads avePerID aveLen bestPerID bestLen BestInRef copy=> 1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13. 14. 15. 16. 17. 18. 19. 20.
4 Failed 17 49 None None None None None 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17 0 0
7 Failed 29 53 None None None None None 7 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 0
8 Failed 77 54 None None None None None 8 0 0 11 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
9 Failed 58 78 None None None None None 9 0 0 9 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
10 Failed 54 52 None None None None None 10 0 0 10 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
11 Failed 49 51 None None None None None 11 0 0 8 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0
14 Failed 36 51 None None None None None 14 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
15 Failed 28 45 None None None None None 15 0 0 3 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
16 Failed 28 43 None None None None None 16 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
17 Failed 27 82 None None None None None 17 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
18 Failed 26 48 None None None None None 18 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
21 Failed 21 88 None None None None None 21 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
22 Failed 19 49 None None None None None 22 0 0 3 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
23 Failed 18 67 None None None None None 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 0 0 0 0
24 Failed 17 57 None None None None None 24 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
25 Failed 15 58 None None None None None 25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
26 Failed 14 42 None None None None None 26 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
27 Failed 13 65 None None None None None 27 0 0 1 0 0 0 0 0 0 0 0 0 0 0 10 0 0 0 0 0
28 Failed 12 77 None None None None None 28 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
30 Failed 9 78 None None None None None 30 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
34 Failed 6 68 None None None None None 34 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0
35 Failed 5 62 None None None None None 35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
2 MultipleAsm 597 173 89.23 14693 99.78 40008 copy2 2 1 182 2 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
0 Success 528 94 93.48 7437 99.76 31866 copy9 0 0 3 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
1 Success 212 141 94.53 12277 96.38 11527 copy11 1 0 0 0 0 128 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
3 Success 44 251 95.01 20065 99.56 81972 copy1 3 8 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 2
5 Success 116 213 94.33 18182 99.73 71524 copy2 5 0 61 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
6 Success 26 75 93.99 6456 99.88 23491 copy6 6 0 0 0 0 0 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0
12 Success 38 44 93.29 6691 96.32 10949 copy11 12 1 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
13 Success 37 361 95.21 29103 99.66 122184 copy1 13 9 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
19 Success 25 37 92.8 6425 95.16 10441 copy15 19 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
20 Success 23 71 93.38 6478 97.5 10495 copy16 20 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
29 Success 10 47 93.63 6440 95.95 10484 copy15 29 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
31 Success 8 78 94.95 8126 99.8 41344 copy1 31 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
32 Success 7 68 93.85 6363 96.56 10377 copy12 32 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
33 Success 7 49 93.55 6434 98.53 10461 copy17 33 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
36 Success 4 42 95.84 4517 96.66 4417 copy12 36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
37 Success 4 55 94.29 6289 99.6 10190 copy13 37 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0