001378F.5500.102800 collpase from CHM1
region: 001378F.5500.102800
copies: 28
number of assemblies: 30
number of CC groups: 38
Regions in reference:
chr3:75543433-75882598[94.707,96.501,96.042,92.636][95.102,94.790,96.016,94.952] chr20:29270937-29543149[94.921,96.537,97.200,96.222,92.698][95.524,96.513,97.200,96.266,93.606] chr22:11333207-11597337[98.572,96.915,91.797][98.572,96.803,96.946]
chr4:189888275-190147566[93.775,94.261,94.171][93.928,94.598,98.606] chr12:34070367-34310986[94.336,95.113,91.112,89.633,90.943,94.370][94.335,95.113,91.558,90.470,91.392,94.370] chr12:38063730-38298233[90.486,95.872,91.693,95.339][93.064,95.872,90.343,95.339]
chr21:8996788-9227135[95.185][98.456] chrY:17422448-17657052[99.979][99.979] chrY:18248958-18483563[95.996,99.977][99.952,99.977]
chrY:11082481-11312390[90.549,93.815][90.548,96.545] chr4:49063899-49300149[98.610,96.392][95.677,98.402] chr21:8661687-8897962[98.025,97.451][99.310,99.202]
chr20:30711901-30952574[94.094,95.740][96.167,95.879] chr22:12677264-12913172[89.703,98.077,99.866,96.123][89.703,98.767,99.866,97.574] chr20:29702754-29936739[90.954,92.327][92.580,95.135]
chr21:9227651-9461660[96.666][99.551] chr22:11837358-12071586[98.657,98.274][98.367,98.873] chrY:9995244-10227007[89.998,89.574][90.367,93.277]
chr4:49496393-49720917[98.367][98.151] chr22:12000545-12226309[98.274,98.657][98.873,98.685] chr10:133522566-133747054[91.614,90.261,98.282,99.121,99.195][90.756,90.261,98.282,99.335,99.457]
chr9:63697526-63918493[98.497][98.297] chr9:62704687-62918112[97.889,99.758,98.827][98.342,99.484,98.827] chr9:41140347-41353312[95.392,97.765][98.787,99.166]
chr18:0-163602[96.291,97.694,98.866][96.927,97.556,98.866] chr9:138060018-138272386[96.850][98.868] chr10:0-164274[90.403,97.694][90.395,97.694]
chr22:11447337-11658558[98.572,96.915][98.572,96.803]
Group Stats:
CC_ID Status numOfPSVs reads avePerID aveLen bestPerID bestLen BestInRef copy=> 1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13. 14. 15. 16. 17. 18. 19. 20. 21. 22. 23. 24. 25. 26. 27. 28.
5 Failed 17 48 None None None None None 5 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0
11 Failed 38 68 None None None None None 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0 0 0 0 0 0 0
17 Failed 20 54 None None None None None 17 0 0 0 0 0 0 0 0 0 0 0 0 0 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0
19 Failed 18 87 None None None None None 19 0 0 0 0 0 0 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
20 Failed 15 111 None None None None None 20 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
24 Failed 11 39 None None None None None 24 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
26 Failed 8 69 None None None None None 26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
33 Failed 4 132 None None None None None 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 Success 10 136 92.31 11670 98.04 26048 copy7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
1 Success 73 97 92.06 9703 96.55 24911 copy19 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
2 Success 299 149 93.42 10443 95.28 36387 copy3 2 5 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
3 Success 123 85 92.31 10095 98.36 24433 copy3 3 0 0 72 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
4 Success 36 98 91.95 11857 98.74 26391 copy7 4 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
6 Success 319 88 90.72 15900 98.47 35832 copy2 6 0 88 0 3 9 3 0 1 0 0 0 0 2 0 0 0 0 3 0 0 0 0 0 1 0 0 1 0
7 Success 196 91 91.74 12815 93.73 28342 copy7 7 5 0 0 0 0 0 0 0 0 5 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 1
8 Success 100 151 91.4 16651 99.95 50129 copy1 8 71 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0
9 Success 70 275 93.81 17706 99.67 62203 copy1 9 57 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
10 Success 49 112 91.8 9074 96.89 22050 copy11 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22 0 0 0 0 0 0 0 0
12 Success 38 69 91.99 8256 98.48 20077 copy17 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
13 Success 32 77 94.88 14291 98.67 32159 copy12 13 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
14 Success 27 111 91.91 9818 98.24 22020 copy17 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0
15 Success 22 101 91.86 13182 98.29 29758 copy7 15 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0
16 Success 20 82 93.54 8739 99.97 21490 copy11 16 0 0 0 0 0 0 0 0 0 0 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
18 Success 20 106 91.68 10000 96.83 25180 copy19 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
21 Success 15 70 92.11 9507 96.81 24241 copy19 21 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
22 Success 12 56 91.59 11444 95.71 24569 copy13 22 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
23 Success 11 92 92.18 11933 99.28 26841 copy7 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
25 Success 9 103 92.05 13196 99.26 29829 copy7 25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
27 Success 8 51 92.24 8584 95.82 20864 copy7 27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
28 Success 7 77 92.19 9571 99.98 21005 copy16 28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0
29 Success 7 50 91.94 8620 95.86 20816 copy7 29 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
30 Success 6 88 92.01 12753 98.26 29027 copy7 30 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
31 Success 5 140 91.61 9879 99.88 24007 copy12 31 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
32 Success 5 54 92.04 8553 98.19 20903 copy17 32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
34 Success 4 79 92.54 8692 99.61 20569 copy16 34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
35 Success 4 76 91.46 9070 99.67 21255 copy12 35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
36 Success 4 60 91.17 10059 100.0 24503 copy12 36 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
37 Success 4 40 92.31 7023 96.91 17004 copy7 37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0