001624F.46100.99000 collpase from CHM1
region: 001624F.46100.99000
copies: 29
number of assemblies: 8
number of CC groups: 23
Regions in reference:
chr16:32185326-32442649[98.844][99.355] chr16:33391269-33648693[99.971,99.988][99.987,98.963] chr2:87252130-87481062[99.874,98.628,99.331][99.088,98.270,99.331]
chr1:144022487-144249439[91.919][99.365] chr2:91443753-91668381[93.353][98.643] chr2:90148376-90372954[89.599,89.721,90.563][89.599,97.597,98.468]
chr22:22164495-22395064[99.475,94.054,97.015][99.475,94.054,97.074] chr1:144717123-144942985[90.823][99.512] chr15:20201278-20431778[94.097,92.609,99.650][95.404,98.188,99.650]
chr22:16426840-16649585[94.489,97.945,96.257,90.900,97.081][94.489,97.817,96.257,97.456,96.685] chr15:20021736-20245092[92.609][98.188] chr15:21028272-21251632[99.252,99.617][97.485,99.475]
chr10:42116471-42336208[97.229,96.474,95.471,95.272][97.761,96.049,96.848,95.272] chr2:91880926-92100647[96.238][97.461] chr10:38636581-38855984[89.837,92.425,90.453,90.453,97.131][90.389,92.425,90.453,90.014,97.082]
chr2:94111712-94331348[97.107][97.856] chr22:10531863-10751542[99.367,91.895][99.134,95.916] chr21:8554751-8774412[98.025,97.451][99.310,99.202]
chr9:63288380-63508578[99.374][99.458] chr9:65703929-65922502[99.355][99.548] chr9:62930759-63150103[99.708,98.827][99.694,98.827]
chr9:65099200-65318086[99.587][99.587] chr9:40487409-40709351[98.767][99.319] chr9:64614886-64832295[99.137][99.121]
chrY:11320441-11539448[90.543][96.034] chrY:867504-1082153 chrX:867504-1082153[92.482,91.413,90.677,91.420,91.704][92.482,91.413,90.677,91.420,91.524]
chr22:28575668-28786168[94.877][95.683] chr22:11049374-11260921[98.154,99.937,91.797][98.106,99.937,96.946]
Group Stats:
CC_ID Status numOfPSVs reads avePerID aveLen bestPerID bestLen BestInRef copy=> 1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13. 14. 15. 16. 17. 18. 19. 20. 21. 22. 23. 24. 25. 26. 27. 28. 29.
1 Failed 6 48 None None None None None 1 0 0 0 0 0 0 0 0 1 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
5 Failed 49 52 None None None None None 5 0 0 0 0 0 0 0 0 0 0 0 0 44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
6 Failed 39 83 None None None None None 6 0 0 0 0 0 0 38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
7 Failed 35 83 None None None None None 7 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
8 Failed 28 50 None None None None None 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
9 Failed 27 67 None None None None None 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 25 0 0 0 0 0 0 0 0 0 0 0 0 0
10 Failed 18 64 None None None None None 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3
11 Failed 18 48 None None None None None 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0
13 Failed 13 66 None None None None None 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
14 Failed 12 41 None None None None None 14 0 0 0 0 0 0 0 0 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
15 Failed 11 64 None None None None None 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
16 Failed 11 66 None None None None None 16 0 0 0 0 0 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
17 Failed 9 103 None None None None None 17 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
20 Failed 4 50 None None None None None 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
22 Failed 4 67 None None None None None 22 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 Success 8 112 96.63 19222 97.84 25478 copy2 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
2 Success 127 70 96.34 9121 96.12 16124 copy2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24 0 0 26 4
3 Success 98 189 96.48 22421 96.79 28804 copy3 3 23 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 1 0
4 Success 53 216 96.56 21855 98.99 56382 copy1 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0
12 Success 13 70 96.61 19449 99.18 30446 copy9 12 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
18 Success 8 64 96.58 17118 97.16 25573 copy7 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
19 Success 4 75 96.84 19250 99.99 23311 copy11 19 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
21 Success 4 51 96.84 17218 98.26 19610 copy16 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0