This page contains supplemental and underlying data for the manuscript by JA Bailey JM Kidd and EE Eichler and represents the analysis of candidate genes for CNV at the level of the exon using NimbleGen array comparative genomic hybridization.
Data Visualization in Genome Browser
Local
Genome Browser (Select
Human and May 2004 assembly –hg17/build35)
Browser
Tracks:
geneCNVregions (CNV regions used to identify candidates)
geneCNVexons (exons of identified candidate genes)
geneCNVchipspots (non-overlapping regions within which oligonucleotide probes were designed)
geneCNV_[name]: 9 tracks of probe log2 normalized hybridization results for each individual assayed, where [name] is the Agencourt individuals (e.g. geneCNV_GM18507)
Zip file of browser tracks (geneCNV_browser.zip)
Complete CNV detection results and annotation
Complete_Detection_Results_and_Gene_Annotation.xls: This table contains the CNV detection results for all candidate genes in all individuals as well as associated gene annotation.
RefSeq_NR.txt: Non-redundant RefSeq transcripts from which candidates were identified. This represents a version of NCBI RefSeq aiming to collapse isoforms, capture all exonic sequence and to remove redundancy in genes that overlap at the exon level.
Complete normalized array-CGH Data
108582_normalized.txt, 108586_normalized.txt, 110194_normalized.txt, 110203_normalized.txt, 110205_normalized.txt, 110210_normalized.txt, 110214_normalized.txt, 110219_normalized.txt, 110221_nomralized.txt
SampleKey.txt: File Linking above experiments to individuals assayed.
NimbleGen Design Files: Bailey_FT.ndf, Bailey_FT.pos