The saddest aspect of life right now is that science gathers knowledge faster than society gathers wisdom.
--- Isaac Asimov

Eichler Lab

Department of Genome Sciences,
University of Washington

David Porubsky


Postdoctoral Fellow
Office Phone: (206) 543-9698
Office Location: S433D
Email: porubsky [AT] u.washington.edu

Professional Experience


Postdoctoral Fellow
Dept. Genome Sciences, U. Washington, Seattle, WA, USA
2018-current
Postdoctoral Fellow
Max Planck Institute for Informatics, Saarland University, Saarbrucken, Germany
2017-2018
EMBO short-term Fellow
Max Planck Institute for Informatics, Saarland University, Saarbrucken, Germany
2016
Internship student
University Medical Center Utrecht, Utrecht, The Netherlands
2012

Education


Ph.D., Single-cell Genomics & Bioinformatics
University of Groningen, Groningen, The Netherlands
2017
M.Sc., Molecular Biology Comenius University in Bratislava, Bratislava, Slovakia 2009

Research Interests


Bioinformatics, Single-cell genomics & Evolutionary biology

Selected Publications


Ghareghani M, Porubsky D, Sanders AD, Meiers S, Eichler EE, Korbel JO, Marschall T. Strand-seq enables reliable separation of long reads by chromosome via expectation maximization. (2018) Bioinformatics, 1;34(13):i115-i123.

Porubsky D, Garg S, Sanders AD, Korbel JO, Guryev V, Lansdorp PM, Marschall T. Dense andaccurate whole-chromosome haplotyping of individual genomes. (2017) Nat Commun. 8(1):1293

Porubsky D, Sanders AD, van Wietmarschen N, Falconer E, Hills M, Spierings DC, Bevova MR, Guryev V, Lansdorp PM. Direct chromosome-length haplotyping by single-cell sequencing. (2016) Genome Research, 26:1–10