David Porubsky
 |
Postdoctoral Fellow Office Phone: (206) 685-7336 Office Location: S433D Email: porubsky [AT] u.washington.edu |
Professional Experience
| Acting Instructor |
Dept. Genome Sciences, U. Washington, Seattle, WA, USA |
2021-current |
| Postdoctoral Fellow |
Dept. Genome Sciences, U. Washington, Seattle, WA, USA |
2018-2021 |
| Postdoctoral Fellow |
Max Planck Institute for Informatics, Saarland University, Saarbrucken, Germany |
2017-2018 |
| EMBO short-term Fellow |
Max Planck Institute for Informatics, Saarland University, Saarbrucken, Germany |
2016 |
| Internship student |
University Medical Center Utrecht, Utrecht, The Netherlands |
2012 |
Education
| Ph.D., Single-cell Genomics & Bioinformatics |
University of Groningen, Groningen, The Netherlands |
2017 |
| M.Sc., Molecular Biology | Comenius University in Bratislava, Bratislava, Slovakia | 2009 |
Research Interests
| Bioinformatics, Single-cell genomics & Evolutionary biology |
Selected Publications
Ghareghani M, Porubsky D, Sanders AD, Meiers S, Eichler EE, Korbel JO, Marschall T. Strand-seq enables reliable separation of long reads by chromosome via expectation maximization. (2018) Bioinformatics, 1;34(13):i115-i123.
Porubsky D, Garg S, Sanders AD, Korbel JO, Guryev V, Lansdorp PM, Marschall T. Dense andaccurate whole-chromosome haplotyping of individual genomes. (2017) Nat Commun. 8(1):1293
Porubsky D, Sanders AD, van Wietmarschen N, Falconer E, Hills M, Spierings DC, Bevova MR, Guryev V, Lansdorp PM. Direct chromosome-length haplotyping by single-cell sequencing. (2016) Genome Research, 26:1–10