track collapses
    shortLabel collapses
    longLabel collapses
    bigDataUrl collapses.bb
    type bigBed 9

    track read_depth
    shortLabel read_depth
    longLabel read_depth
    bigDataUrl read_depth.bw
    type bigWig


track coverage_MultiWig
shortLabel coverage
longLabel coverage
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
type bigWig
viewLimits 0:200
itemRgb on
visibility full
priority 1
group coverage

track norm
bigDataUrl low.bw
parent coverage_MultiWig
color 224,224,224
type bigWig


track 2SD
bigDataUrl 2sd.bw
parent coverage_MultiWig
color 253,219,199
type bigWig

track 2.5SD
bigDataUrl 2.5sd.bw
parent coverage_MultiWig
color 239,138,98
type bigWig

track 3SD
bigDataUrl 3sd.bw
parent coverage_MultiWig
color 178,24,43
type bigWig

track SDA_contigs
bigDataUrl SDA_ref_ucsc.bam
shortLabel SDA
longLabel SDA
type bam

track CH250.concordant.best
bigDataUrl CH250.concordant.best.bb
shortLabel CH250 concordant best
longLabel CH250 concordant best
type bigBed 12
group clone_end_mappings
visibility pack
itemRgb on
searchIndex name

track CH250.concordant.tied
bigDataUrl CH250.concordant.tied.bb
shortLabel CH250 concordant tied
longLabel CH250 concordant tied
type bigBed 12
group clone_end_mappings
visibility pack
itemRgb on
searchIndex name

track CH250.discordanttrans.best.sort
bigDataUrl CH250.discordanttrans.best.sort.bb
shortLabel CH250 discordanttrans best sort
longLabel CH250 discordanttrans best sort
type bigBed 12
group clone_end_mappings
visibility pack
itemRgb on
searchIndex name

track CH250.discordanttrans.tied.sort
bigDataUrl CH250.discordanttrans.tied.sort.bb
shortLabel CH250 discordanttrans tied sort
longLabel CH250 discordanttrans tied sort
type bigBed 12
group clone_end_mappings
visibility pack
itemRgb on
searchIndex name

track WGAC
bigDataUrl GenomicSuperDupNoMLNoQNV1kb90percentChrs.bb
shortLabel WGAC
longLabel WGAC
type bigBed 9
visibility dense
itemRgb on
searchIndex name