AllControlCNVs_19584cases_hg18_July30_2012_imgOrd 10
_ 1645039301851
altSeqLiftOverPsl hide
c chr16
centerLabels 1
clade hub_104
cons100way hide
cons44way hide
db hub_104_t2t-chm13-v2.0
dbSnp153Common_imgOrd 2
defaultsSet on
defaultsSet on
defaultsSet on
dinkL 2.0
dinkR 2.0
enableHighlightingDialog 1
encodeCcreCombined hide
encodeCcreCombined_imgOrd 5
exaptedRepeats hide
exaptedRepeats_imgOrd 12
exonNumbers 1
expOrder_cons100way phyloP100way 
expOrder_cons44way phyloP44wayPlacMammal 
expOrder_hub_105_Bonobo_Mhudiblu_PPA_read_depth hub_105_Bonobo_Mhudiblu_PPA_read_depth 
expOrder_hub_105_Chimpanzee_Clint_PTR hub_105_Chimpanzee_Clint_PTR 
expOrder_hub_105_Gibbon_Asia_NLE hub_105_Gibbon_Asia_NLE 
expOrder_hub_105_Gorilla_Kamilah_GGO hub_105_Gorilla_Kamilah_GGO 
expOrder_hub_105_Macaque_indian_AG07107_MMU hub_105_Macaque_indian_AG07107_MMU 
expOrder_hub_105_Marmoset_CJ1700_CJA hub_105_Marmoset_CJ1700_CJA 
expOrder_hub_105_OWL_monkey_86718_ANA hub_105_OWL_monkey_86718_ANA 
expOrder_hub_105_Orangutan_Susie_PAB hub_105_Orangutan_Susie_PAB 
expOrder_hub_105_mouse_lemur_Inina_MMUR hub_105_mouse_lemur_Inina_MMUR 
expOrder_wgEncodeBuOrchid wgEncodeBuOrchidSignalRep1Gm12878 wgEncodeBuOrchidSignalRep2Gm12878 
expOrder_wgEncodeReg wgEncodeRegMarkEnhH3k4me1 wgEncodeRegMarkPromoter 
fixSeqLiftOverPsl hide
four_way hide
gap dense
gap_imgOrd 7
genomicSuperDups dense
genomicSuperDups_imgOrd 5
goButton go
gold_imgOrd 2
gtexGeneV8 hide
guidelines 1
hgFind.matches 
hgHubConnect.hub.104 1
hgHubConnect.hub.105 1
hgHubConnect.hub.106 1
hgHubConnect.hub.111 1
hgHubConnect.hub.113 1
hgHubConnect.hub.132 1
hgS_DataTableState %7B%22time%22%3A1631291158722%2C%22start%22%3A0%2C%22length%22%3A10%2C%22order%22%3A%5B2%2C%22desc%22%5D%2C%22search%22%3A%7B%22search%22%3A%22%22%2C%22smart%22%3Atrue%2C%22regex%22%3Afalse%2C%22caseInsensitive%22%3Atrue%7D%2C%22columns%22%3A%5B%7B%22visible%22%3Atrue%2C%22search%22%3A%7B%22search%22%3A%22%22%2C%22smart%22%3Atrue%2C%22regex%22%3Afalse%2C%22caseInsensitive%22%3Atrue%7D%7D%2C%7B%22visible%22%3Atrue%2C%22search%22%3A%7B%22search%22%3A%22%22%2C%22smart%22%3Atrue%2C%22regex%22%3Afalse%2C%22caseInsensitive%22%3Atrue%7D%7D%2C%7B%22visible%22%3Atrue%2C%22search%22%3A%7B%22search%22%3A%22%22%2C%22smart%22%3Atrue%2C%22regex%22%3Afalse%2C%22caseInsensitive%22%3Atrue%7D%7D%2C%7B%22visible%22%3Atrue%2C%22search%22%3A%7B%22search%22%3A%22%22%2C%22smart%22%3Atrue%2C%22regex%22%3Afalse%2C%22caseInsensitive%22%3Atrue%7D%7D%2C%7B%22visible%22%3Atrue%2C%22search%22%3A%7B%22search%22%3A%22%22%2C%22smart%22%3Atrue%2C%22regex%22%3Afalse%2C%22caseInsensitive%22%3Atrue%7D%7D%2C%7B%22visible%22%3Atrue%2C%22search%22%3A%7B%22search%22%3A%22%22%2C%22smart%22%3Atrue%2C%22regex%22%3Afalse%2C%22caseInsensitive%22%3Atrue%7D%7D%2C%7B%22visible%22%3Atrue%2C%22search%22%3A%7B%22search%22%3A%22%22%2C%22smart%22%3Atrue%2C%22regex%22%3Afalse%2C%22caseInsensitive%22%3Atrue%7D%7D%2C%7B%22visible%22%3Atrue%2C%22search%22%3A%7B%22search%22%3A%22%22%2C%22smart%22%3Atrue%2C%22regex%22%3Afalse%2C%22caseInsensitive%22%3Atrue%7D%7D%2C%7B%22visible%22%3Atrue%2C%22search%22%3A%7B%22search%22%3A%22%22%2C%22smart%22%3Atrue%2C%22regex%22%3Afalse%2C%22caseInsensitive%22%3Atrue%7D%7D%5D%7D
hgS_loadUrlName 
hgS_newSessionName t2t-chm13-v2.0
hgS_newSessionShare 1
hgS_otherUserName dgordon
hgS_otherUserSessionName t2t-chm13-v1.0b
hgS_saveLocalFileCompress none
hgS_saveLocalFileName t2t_v2_0_setup.txt
hgTracksConfigPage 
hgsid 505_FacvimyFfPpGtD3jbLen8sbcM7hw
hgt.labelWidth 20
hgt_configGroupTarget none
hgta_compressType gzip
hgta_group rep
hgta_outFileName microsatellite_hg38.bed
hgta_outputType primaryTable
hgta_regionType genome
hgta_table microsat
hgta_track microsat
hgtgroup_CCDG_close 0
hgtgroup_PUR_variation_close 0
hgtgroup_autism_noncoding_project_close 0
hgtgroup_autism_studies_close 0
hgtgroup_cenTelo_close 0
hgtgroup_clone_end_mappings_close 0
hgtgroup_compGeno_close 0
hgtgroup_cores_close 0
hgtgroup_covid_close 0
hgtgroup_denisova_close 1
hgtgroup_encodeChip_close 1
hgtgroup_encodeChrom_close 1
hgtgroup_encodeCompAndVar_close 1
hgtgroup_encodeGenes_close 1
hgtgroup_encodeTxLevels_close 1
hgtgroup_expression_close 0
hgtgroup_genes_close 0
hgtgroup_hub_105_close 0
hgtgroup_hub_106_close 0
hgtgroup_hub_111_close 0
hgtgroup_hub_113_close 0
hgtgroup_hub_132_close 0
hgtgroup_hub_145_close 0
hgtgroup_illumina_read_depth_close 0
hgtgroup_map_close 0
hgtgroup_morbidity_map_close 0
hgtgroup_neandertal_close 1
hgtgroup_other_close 0
hgtgroup_phenDis_close 0
hgtgroup_regulation_close 0
hgtgroup_rep_close 0
hgtgroup_rna_close 0
hgtgroup_simons_genome_project_close 0
hgtgroup_singleCell_close 0
hgtgroup_varRep_close 0
hgtgroup_x_close 1
highlight hg18#chr4#1496032#1496682#aaedff|hg18#chr8#2202724#2203469#aaedff|hg18#chr19#59492747#59496255#aaedff|hg18#chr8#2276638#2317669#aaedff|hg38#chr14#18606821#18609702#aaedff|hg38#chr1#12843225#13262444#aaedff|hg38#chr7#65255732#65257869#aaedff
hub_104_consensus_CHM13_V4 hide
hub_104_rmsk dense
hub_104_sedefSegDups dense
hub_104_simpleRepeat dense
hub_105_Bonobo_Mhudiblu_PPA_read_depth hide
hub_105_Chimpanzee_Clint_PTR hide
hub_105_Gibbon_Asia_NLE hide
hub_105_Gorilla_Kamilah_GGO hide
hub_105_Macaque_indian_AG07107_MMU hide
hub_105_Marmoset_CJ1700_CJA hide
hub_105_OWL_monkey_86718_ANA hide
hub_105_Orangutan_Susie_PAB hide
hub_105_mouse_lemur_Inina_MMUR hide
hub_106_bonobo_alignments hide
hub_106_chimpanzee_alignments hide
hub_106_gibbon_alignments hide
hub_106_gorilla_alignments hide
hub_106_macaque_chinese_alignments hide
hub_106_macaque_indian_alignments hide
hub_106_marmoset_alignments hide
hub_106_orangutan_alignments hide
hub_113_super_yafei_william_wssd_copy_number dense
hub_132_Cases hide
hub_132_Cases_imgOrd 13
hub_132_Controls hide
hub_132_Controls_imgOrd 14
hub_145_finalcalls_14455_p1_manta_cnv full
hub_145_finalcalls_14455_p1_manta_cnv_imgOrd 10
hub_145_finalcalls_14455_p1_smoove_cnv_imgOrd 11
hub_145_rawcalls_14455_p1_manta_cnv full
hub_145_rawcalls_14455_p1_manta_cnv_imgOrd 9
hub_145_rawcalls_14455_p1_smoove_cnv_imgOrd 10
hub_145_rawcalls_14455_p1_sv_VAL_cnv full
hub_145_rawcalls_14455_p1_sv_VAL_cnv_imgOrd 9
hub_145_validcalls_14455_p1_cnv full
hub_145_validcalls_14455_p1_cnv_imgOrd 8
ideogram 1
individual_callers hide
intronEst_imgOrd 8
jsh_pageVertPos 0
knownGene dense
knownGene.label.gene 1
knownGene_imgOrd 1
l 34139830
lastPosition chr3:90755737-90789938
lastVirtModeExtra 
lastVirtModeExtraState 
lastVirtModeType default
leftLabels 1
microsat dense
microsat_imgOrd 4
morbidityMap_19584Controls_AllCNVs_hg38 hide
morbidityMap_19584Controls_AllCNVs_hg38_imgOrd 10
morbidityMap_29085Cases_RareUniqueCNVs_hg38 hide
morbidityMap_29085Cases_RareUniqueCNVs_hg38_imgOrd 8
morbidityMap_29085Cases_RareUniqueCalls_lifted_to_hg19 full
morbidityMap_29085Cases_RareUniqueCalls_lifted_to_hg19_imgOrd 14
mrna_imgOrd 10
multiz44way_imgOrd 21
ncbiRefSeqCurated_imgOrd 1
ncbiRefSeqCurated_sel 0
nextExonArrows 1
nextItemArrows 0
oldPosition chr3:90755737-90789938
org hub_104_CHM13 Homo sapiens
per_sample_calls hide
phyloP44wayPlacMammal_imgOrd 20
pix 2339
position chr3:90755737-90789938
position.hg18 lastVirtModeType=default&lastVirtModeExtraState=&virtModeType=default&virtMode=0&nonVirtPosition=&position=chr1%3A12920791%2D13002867
position.hg19 lastVirtModeType=default&lastVirtModeExtraState=&virtModeType=default&virtMode=0&nonVirtPosition=&position=chr4%3A1495243%2D1497474
position.hg38 lastVirtModeType=default&lastVirtModeExtraState=&virtModeType=default&virtMode=0&nonVirtPosition=&position=chr8%3A6117784%2D6502650
position.hub_104_t2t-chm13-v1.0 lastVirtModeType=default&lastVirtModeExtraState=&virtModeType=default&virtMode=0&nonVirtPosition=&position=chr3%3A90755737%2D90789938
position.hub_104_t2t-chm13-v1.1 lastVirtModeType=default&lastVirtModeExtraState=&virtModeType=default&virtMode=0&nonVirtPosition=&position=chr3%3A90755737%2D90789938
position.hub_104_t2t-chm13-v2.0 lastVirtModeType=default&lastVirtModeExtraState=&virtModeType=default&virtMode=0&nonVirtPosition=&position=chr3%3A90755737%2D90789938
pubsBlat_imgOrd 10
pubsMarkerSnp_imgOrd 11
r 35193488
refGene.alwaysZero OFF
refGene.autoScale auto-scale to data view
refGene.baseColorDrawOpt none
refGene.codonNumbering 0
refGene.doWiggle 0
refGene.heightPer 128
refGene.hideNoncoding 0
refGene.horizGrid OFF
refGene.label.acc 0
refGene.label.gene 1
refGene.label.omimhg18 0
refGene.lineBar bar
refGene.negateValues 0
refGene.smoothingWindow OFF
refGene.transformFunc NONE
refGene.windowingFunction maximum
refGene.yLineMark 0
refGene.yLineOnOff OFF
refGene_imgOrd 1
rmsk_imgOrd 3
ruler dense
sendToGalaxy 0
sendToGreat 0
sessionTable_length 10
simOrder_cons100way phyloP100way 
simOrder_cons44way phyloP44wayPlacMammal 
simOrder_hub_105_Bonobo_Mhudiblu_PPA_read_depth hub_105_Bonobo_Mhudiblu_PPA_read_depth 
simOrder_hub_105_Chimpanzee_Clint_PTR hub_105_Chimpanzee_Clint_PTR 
simOrder_hub_105_Gibbon_Asia_NLE hub_105_Gibbon_Asia_NLE 
simOrder_hub_105_Gorilla_Kamilah_GGO hub_105_Gorilla_Kamilah_GGO 
simOrder_hub_105_Macaque_indian_AG07107_MMU hub_105_Macaque_indian_AG07107_MMU 
simOrder_hub_105_Marmoset_CJ1700_CJA hub_105_Marmoset_CJ1700_CJA 
simOrder_hub_105_OWL_monkey_86718_ANA hub_105_OWL_monkey_86718_ANA 
simOrder_hub_105_Orangutan_Susie_PAB hub_105_Orangutan_Susie_PAB 
simOrder_hub_105_mouse_lemur_Inina_MMUR hub_105_mouse_lemur_Inina_MMUR 
simOrder_wgEncodeBuOrchid wgEncodeBuOrchidSignalRep1Gm12878 wgEncodeBuOrchidSignalRep2Gm12878 
simOrder_wgEncodeReg wgEncodeRegMarkEnhH3k4me1 wgEncodeRegMarkPromoter 
simpleRepeat dense
simpleRepeat_imgOrd 6
snp130_imgOrd 2
textFont Bitmap
textSize 8
textStyle Normal
topSubmit submit
trackControlsOnMain 1
trackHubs 132 113 111 106 105 104
udcTimeout 1
virtMode 0
virtModeType default
wgEncodeBuOrchidSignalRep1Gm12878_imgOrd 13
wgEncodeBuOrchidSignalRep2Gm12878_imgOrd 14
wgEncodeBuOrchidV1_imgOrd 8
wgEncodeBuOrchidV2_imgOrd 9
wgEncodeRegDnaseClustered_imgOrd 6
wgEncodeRegMarkEnhH3k4me1 hide
wgEncodeRegMarkEnhH3k4me1_imgOrd 7
wgEncodeRegMarkEnhH3k4me1_sel 0
wgEncodeRegMarkH3k27ac hide
wgEncodeRegMarkPromoter hide
wgEncodeRegMarkPromoter_imgOrd 8
wgEncodeRegMarkPromoter_sel 0
wgEncodeRegTfbsClustered hide
wgEncodeRegTfbsClusteredV3_imgOrd 13
wgEncodeRegTfbsClustered_imgOrd 9
wgEncodeRegTfbsClustered_sel 0
defaultsSet on