track read_depth
type bigWig 0 200
bigDataUrl read_depth/bonobo_readdepth.bw
shortLabel read depth
longLabel read depth
visibility full
group coverage
itemRgb on
priority 3


track RP11_aligned
type bigBed 9
bigDataUrl  RP11_aligned/RP11.bb
shortLabel RP11_aligned
longLabel RP11_aligned
visibility full
itemRgb on
priority 10


track contigs
type bigBed 9
bigDataUrl contigs_and_scaffolds/contigs.bb
shortLabel contigs
longLabel contigs
visibility full
itemRgb on
priority 2

track fish_mapping
bigDataUrl  bac_fish/bac_fish.bb
shortLabel FISH mapping
longLabel FISH mapping
type bigBed 9 .
group gaps
itemRgb on
visibility hide

track new_fish_mapping
bigDataUrl  bac_fish/allchr.bb
shortLabel new FISH mapping
longLabel new FISH mapping
type bigBed 9 .
group gaps
itemRgb on
visibility hide

track CH251.concordant.best
bigDataUrl CH251_bes_mapping/CH251.concordant.best.bb
shortLabel CH251 concordant best
longLabel CH251 concordant best
type bigBed 12
group clone_end_mappings
visibility squish
itemRgb on
searchIndex name

track CH251.concordant.tied
bigDataUrl CH251_bes_mapping/CH251.concordant.tied.bb
shortLabel CH251 concordant tied
longLabel CH251 concordant tied
type bigBed 12
group clone_end_mappings
visibility squish
itemRgb on
searchIndex name

track CH251.discordanttrans.best.sort
bigDataUrl CH251_bes_mapping/CH251.discordanttrans.best.sort.bb
shortLabel CH251 discordanttrans best sort
longLabel CH251 discordanttrans best sort
type bigBed 12
group clone_end_mappings
visibility squish
itemRgb on
searchIndex name

track CH251.discordanttrans.tied.sort
bigDataUrl CH251_bes_mapping/CH251.discordanttrans.tied.sort.bb
shortLabel CH251 discordanttrans tied sort
longLabel CH251 discordanttrans tied sort
type bigBed 12
group clone_end_mappings
visibility squish
itemRgb on
searchIndex name

track CH251.concordant
bigDataUrl CH251_99/CH251.concordant.bb
shortLabel CH251 99 concordant best
longLabel CH251 99 concordant best
type bigBed 12
group clone_end_mappings
visibility squish
itemRgb on
searchIndex name

track concordant_tied
bigDataUrl CH251_99/concordant_tied.bb
shortLabel CH251 99 concordant tied
longLabel CH251 99 concordant tied
type bigBed 12
group clone_end_mappings
visibility squish
itemRgb on
searchIndex name

track CH251.discordanttrans.best
bigDataUrl CH251_99/CH251.discordanttrans.best.bb
shortLabel CH251 99 discordanttrans best sort
longLabel CH251 99 discordanttrans best sort
type bigBed 12
group clone_end_mappings
visibility squish
itemRgb on
searchIndex name

track CH251.discordanttrans.tied
bigDataUrl CH251_99/CH251.discordanttrans.tied.bb
shortLabel CH251 99 discordanttrans tied sort
longLabel CH251 99 discordanttrans tied sort
type bigBed 12
group clone_end_mappings
visibility squish
itemRgb on
searchIndex name