Index of /help/yafmao/public_html

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]${i}.pdf2023-10-16 22:52 3.5K 
[ ](201904)TF Monthly Business Report.docx2019-05-08 04:24 30K 
[ ]1.bed2021-01-02 20:25 14M 
[ ]1.fa2022-08-07 20:17 12K 
[ ]1.fa.aln2022-07-27 04:43 892K 
[ ]1.log2022-08-08 00:29 15M 
[ ]1.tree2022-08-08 00:29 26K 
[TXT]1.txt2023-10-12 04:48 834  
[ ]1_clustered.omega2021-01-03 09:34 23K 
[ ]1_distanted.omega2021-01-03 09:34 75K 
[ ]1_interdist.bed2021-01-17 10:01 2.8M 
[ ]1_interdist_null.bed2021-01-02 20:04 4.5M 
[ ]2.bed2021-01-02 20:25 13M 
[ ]2.fa2022-08-07 20:17 11K 
[ ]2.log2022-08-08 00:29 15M 
[ ]2.tree2022-08-08 00:29 26K 
[TXT]2.txt2023-10-12 04:48 834  
[ ]2_clustered.omega2021-01-03 09:34 22K 
[ ]2_distanted.omega2021-01-03 09:34 67K 
[ ]2_interdist.bed2021-01-02 20:04 1.4M 
[ ]2_interdist_null.bed2021-01-02 20:04 4.5M 
[ ]3.bed2021-01-02 20:24 1.2M 
[ ]3.log2022-08-08 00:29 15M 
[ ]3.tree2022-08-08 00:29 26K 
[ ]3_clustered.omega2021-01-03 09:34 560  
[ ]3_distanted.omega2021-01-03 09:34 14K 
[ ]3_interdist.bed2021-01-02 20:04 182K 
[ ]3_interdist_null.bed2021-01-02 20:04 5.5M 
[ ]4.bed2021-01-02 20:24 1.0M 
[ ]4.log2022-07-31 16:42 21M 
[ ]4.tree2022-07-31 16:43 26K 
[ ]4_clustered.omega2021-01-03 09:34 310  
[ ]4_distanted.omega2021-01-03 09:34 6.2K 
[ ]4_interdist.bed2021-01-02 20:04 149K 
[ ]4_interdist_null.bed2021-01-02 20:04 5.6M 
[ ]5.fa.aln2021-10-12 11:49 624K 
[DIR]10q11/2022-05-01 17:30 -  
[ ]94_cen_only.refine.aln2023-01-04 00:59 4.4M 
[ ]94_chr2_cen.fasta.aln2023-01-03 17:39 21M 
[ ]94_fusion_site.aln2023-01-05 16:44 39M 
[ ]94_fusion_site.refine.aln2023-01-05 17:46 11M 
[ ]1000G_2504_high_coverage.sequence.index2022-11-17 05:20 948K 
[ ]1952_733_RGPDHAP_2000_aln.pdf2023-02-17 21:55 70K 
[ ]1978_733_RGPDHAP_2000_aln.pdf2023-02-17 22:01 70K 
[ ]AASVs_ins_del_CCRE.bed_encode3.bed2021-12-24 10:57 8.1K 
[ ]ABLIM2.bed.pdf2023-04-20 04:10 52K 
[IMG]ACAN_great_ape.png2022-11-22 19:09 153K 
[ ]ACBD7.bed.pdf2024-02-18 15:48 53K 
[ ]ACOX3.bed.pdf2023-04-20 04:10 54K 
[ ]AFAP1.bed.pdf2023-04-20 04:10 42K 
[ ]AG07107.asm.bp.hap1.p_ctg.gfa.fasta2024-03-06 17:59 2.9G 
[ ]AG07107.asm.bp.hap2.p_ctg.gfa.fasta2024-03-06 17:59 2.9G 
[ ]AGAP4.bed.pdf2022-05-05 19:57 49K 
[ ]AGAP9.bed2022-03-13 09:12 30  
[ ]AGAP9.bed.pdf2022-03-13 09:13 50K 
[ ]AKAP13.bed.pdf2022-07-20 19:50 51K 
[ ]ANXA8.bed2022-03-13 09:12 30  
[ ]ANXA8.bed.pdf2022-03-13 09:13 53K 
[ ]ANXA8L1.bed2022-03-13 09:12 32  
[ ]ANXA8L1.bed.pdf2022-03-13 09:13 54K 
[ ]ARHGAP32_all.fasta.aln2020-11-19 14:04 8.3K 
[IMG]AR_great_ape.png2022-11-22 19:09 206K 
[ ]ASAH2.bed.pdf2022-07-14 17:42 53K 
[ ]ASAH2B.bed.pdf2022-07-14 17:42 52K 
[ ]ASIP.bed.pdf2023-02-06 02:29 51K 
[IMG]ASTN2.png2023-02-13 22:57 703K 
[IMG]ASTN2_ape.png2022-11-22 19:09 278K 
[ ]Alu_GT.bed2020-06-30 16:31 95K 
[ ]BONOBO_cluster_exon.bed.anno.uniq2021-01-14 15:23 6.1K 
[ ]BONOBO_desert_50kb_sorted.bed2020-12-21 14:22 27K 
[ ]BONOBO_noncluster_exon.bed.anno.uniq2021-01-14 15:23 31K 
[DIR]Bonobo/2021-06-22 09:29 -  
[IMG]Bonobo_HIFI_out.HIFI.spectra-cn.ln.png2023-02-19 17:52 105K 
[ ]Bonobo_INV_SUM.xlsx2020-04-21 13:49 52K 
[ ]Bonobo_h1.trf.filter.bb2023-05-09 23:13 9.8M 
[ ]Bonobo_h1_scaffolding_ragtag.liftoff.gff2023-05-09 21:38 720M 
[ ]Bonobo_h1_scaffolding_ragtag.liftoff.gff.gz2023-10-18 22:25 1.4M 
[ ]Bonobo_h1_scaffolding_ragtag.liftoff.gff.gz.tbi2023-10-18 22:25 17K 
[ ]Bonobo_h1_scaffolding_ragtag.scaffold.fasta2023-05-09 21:38 3.0G 
[ ]Bonobo_h1_scaffolding_ragtag.scaffold.fasta.fai2023-05-09 21:37 39K 
[ ]C4A.bed.pdf2022-08-27 20:17 48K 
[ ]C4A_exon26.bed_sunk.pdf2022-02-06 15:16 60K 
[ ]C4B.bed.pdf2022-08-27 20:17 50K 
[ ]C4B_exon26.bed_sunk.pdf2022-02-06 15:16 60K 
[ ]C4_left.xml2021-12-03 11:14 1.1M 
[ ]C4_right.xml2021-12-03 11:19 1.2M 
[ ]CALHM3.bed.pdf2022-07-20 19:51 55K 
[ ]CARD16.bed.pdf2023-11-07 21:47 50K 
[ ]CARD16_18.fa.aln2022-01-26 09:18 1.2M 
[ ]CARD16_18.fa.aln.trim_gt0.8.aln2022-01-26 09:22 111K 
[ ]CARD16_18_Marmoset_plot_500_aln.pdf2023-02-16 22:36 57K 
[ ]CARD16_18_OWL_monkey_plot_500_aln.pdf2023-02-16 22:37 57K 
[ ]CARD17.bed.pdf2023-11-07 21:47 51K 
[ ]CARD18.bed.pdf2023-11-07 21:47 52K 
[ ]CAS_CLEA.mut2022-09-19 00:46 2.2K 
[ ]CAS_fingernail.mut2022-09-19 00:46 16K 
[ ]CBWD2.bed.pdf2023-10-24 22:43 45K 
[ ]CDHR1.bed.pdf2022-07-17 00:02 54K 
[ ]CDS.aln2021-01-27 13:17 47K 
[ ]CDS.fa.aln2021-01-26 15:28 47K 
[ ]CHIMP_cluster_exon.bed.anno.uniq2021-01-14 15:23 5.7K 
[ ]CHIMP_desert_50kb_sorted.bed2020-12-21 14:22 27K 
[ ]CHIMP_noncluster_exon.bed.anno.uniq2021-01-14 15:23 32K 
[ ]CKAP2.fa.aln2023-02-28 01:10 1.4K 
[ ]CLEA_fingernail.mut2022-09-19 00:46 8.2K 
[ ]CMAH.comp.fa.aln2021-12-02 14:23 272K 
[ ]CMAH.comp.fa.aln_trimal2021-12-02 14:36 267K 
[IMG]Chimp_HIFI_out.HIFI.spectra-cn.ln.png2023-02-19 17:52 106K 
[ ]Chimpanzee_CLR.fasta2023-07-18 18:52 2.9G 
[IMG]Clint_PTR_HiFiAsm_0.15.2_0.output.png2022-01-09 11:16 519K 
[IMG]Clint_PTR_h2tg000010l.out.png2022-07-07 23:16 505K 
[ ]Clint_PanTro6_HiFi_hg38.fa.aln2021-10-12 08:28 1.9K 
[ ]DCAF8L2.bed.pdf2024-10-19 02:12 50K 
[ ]DCLRE1C_dup.fa.aln2022-01-26 14:49 531K 
[IMG]DEL_Bonobochr4-150489121-DEL-439.png2022-08-25 20:40 72K 
[IMG]DEL_Chimpanzeechr2-63291833-DEL-304.png2022-08-25 20:45 69K 
[IMG]DEL_Human_Yorubanchr2-118302829-DEL-1539.png2022-08-25 20:44 65K 
[IMG]DEL_Human_Yorubanchr3-186126044-DEL-224.png2022-08-25 20:42 54K 
[ ]DHRS12.fa.aln2023-02-28 01:10 723  
[ ]DNA.rmsk.bb2023-05-18 22:14 26M 
[ ]DUX4.bed.pdf2023-05-17 17:39 41K 
[ ]EEF2KMT.bed2022-01-05 18:14 30  
[ ]EGF_clustered.simple.bed2021-01-18 15:03 2.8K 
[ ]EGF_simple.bed2021-01-18 14:57 12K 
[ ]EGF_simple.col.bed2021-01-18 14:57 7.1K 
[ ]EIF3C.bed.pdf2023-03-14 05:07 49K 
[ ]EIF3CL.bed.pdf2023-03-14 05:07 50K 
[IMG]ELN_orangutan.png2022-11-22 19:09 260K 
[ ]Epilepsy_NonEpilepsy.mut2022-09-19 00:46 2.2K 
[ ]Epilepsy_fingernail.mut2022-09-19 00:46 12K 
[ ]FAM220A.bed.pdf2023-07-31 17:40 54K 
[ ]FAM220BP.bed.pdf2023-07-31 17:40 52K 
[ ]FAM220CP.bed.pdf2023-07-31 17:40 52K 
[ ]FO681492.1.fa.aln2022-03-13 10:34 4.5K 
[ ]FOLH1.bed.pdf2024-02-02 14:14 48K 
[ ]FOLH1B.bed.pdf2024-02-02 14:14 51K 
[IMG]FOLH1B.png2024-02-20 00:11 2.6M 
[ ]FRMPD2.bed.pdf2024-11-14 02:13 54K 
[ ]FRMPD2B.bed.pdf2024-11-14 02:13 53K 
[DIR]GBrowser/2023-02-01 00:45 -  
[IMG]GGO_chr2a_end_result.repeat.heatmap.png2023-01-02 02:39 2.4M 
[IMG]GGO_chr2a_start_result.repeat.heatmap.png2023-01-02 02:39 5.6M 
[IMG]GGO_chr2b_end_result.repeat.heatmap.png2023-01-02 02:39 1.0M 
[IMG]GGO_chr2b_start_result.repeat.heatmap.png2023-01-02 02:39 6.7M 
[ ]GPRIN2.bed2022-03-11 18:00 31  
[ ]GPRIN2.bed.pdf2022-03-13 09:14 56K 
[ ]GRCh38.chronly.gene.bed2023-06-30 22:46 1.4M 
[ ]GenomeAnalysisTK.jar2022-08-10 21:41 13M 
[IMG]Gibbon_HIFI_out.HIFI.spectra-cn.ln.png2023-02-19 17:52 112K 
[IMG]Gorilla_HIFI_out.HIFI.spectra-cn.ln.png2023-02-19 17:52 108K 
[ ]HERV_all.fasta.aln2021-01-29 16:12 293K 
[ ]HG002_verkko_1.bed2022-04-25 15:28 648K 
[ ]HG002_verkko_2.bed2022-04-25 15:28 648K 
[DIR]HG01976/2023-02-15 23:06 -  
[IMG]HIFI_out.HIFI.spectra-cn.fl.png2023-02-19 17:50 109K 
[IMG]HIFI_out.HIFI.spectra-cn.ln.png2023-02-19 17:51 105K 
[IMG]HIFI_out.spectra-asm.ln.png2023-02-19 20:05 111K 
[IMG]HIFI_out.spectra-cn.ln.png2023-02-19 20:06 99K 
[IMG]HIFI_rerun_comb.OWL_monkey_h1.spectra-cn.ln.png2023-02-20 00:09 2.7K 
[ ]HSA_PTR_cen_left.fa.aln2022-12-30 18:28 282K 
[ ]HSA_PTR_cen_right.fa.aln2022-12-30 18:29 283K 
[ ]HSA_PTR_chr2_bp.fa.aln2023-01-01 21:01 6.8M 
[ ]HSA_PTR_chr2a_bp_sub.fa.aln2023-01-01 21:22 394K 
[ ]HSA_PTR_chr2b_1_2_3_bp.fa.aln2023-01-03 16:43 8.6M 
[ ]HSA_PTR_chr2b_1_2_bp.fa.aln2023-01-01 20:58 6.5M 
[ ]HSA_PTR_chr2b_bp_sub.fa.aln2022-12-30 16:52 418K 
[ ]HSA_PTR_chr_bp_sub.fa.aln2022-12-30 00:56 706K 
[ ]HTRA3.bed.pdf2023-04-20 04:10 53K 
[ ]H_B_CLUSTERED.bed.exon.anno.uniq.id2021-01-05 13:19 455  
[ ]H_B_CLUSTERED.bed.gene2021-01-05 13:51 2.7K 
[ ]H_B_DISTANT.bed.exon.anno.uniq.id2021-01-05 13:19 8.6K 
[ ]H_B_DISTANT.bed.gene2021-01-05 13:51 29K 
[ ]H_C_CLUSTERED.bed.exon.anno.uniq.id2021-01-05 13:19 423  
[ ]H_C_CLUSTERED.bed.gene2021-01-05 13:51 2.5K 
[ ]H_C_DISTANT.bed.exon.anno.uniq.id2021-01-05 13:19 9.1K 
[ ]H_C_DISTANT.bed.gene2021-01-05 13:51 29K 
[IMG]Hgg38all.CARD16.hgdp_superpop_sunk.png2023-02-20 02:35 11K 
[IMG]Hgg38all.CARD17.hgdp_superpop_sunk.png2023-02-20 02:35 11K 
[IMG]Hgg38all.CARD18.hgdp_superpop_sunk.png2023-02-20 02:35 10K 
[IMG]Hgg38all.CCL3.hgdp_superpop_sunk.png2025-01-09 18:19 12K 
[IMG]Hgg38all.CCL3.hgdp_superpop_wssd.png2025-01-09 18:19 14K 
[IMG]Hgg38all.CCL3L1.hgdp_superpop_sunk.png2025-01-09 18:19 14K 
[IMG]Hgg38all.CCL3L1.hgdp_superpop_wssd.png2025-01-09 18:19 14K 
[IMG]Hgg38all.CCL4.hgdp_superpop_sunk.png2025-01-09 18:19 12K 
[IMG]Hgg38all.CCL4.hgdp_superpop_wssd.png2025-01-09 18:19 13K 
[IMG]Hgg38all.CCL4L2.hgdp_superpop_sunk.png2025-01-09 18:19 14K 
[IMG]Hgg38all.CCL4L2.hgdp_superpop_wssd.png2025-01-09 18:19 14K 
[ ]Hgg38all.EIF3C.hgdp_superpop_sunk.pdf2023-03-14 18:25 21K 
[ ]Hgg38all.EIF3C.hgdp_superpop_wssd.pdf2023-03-14 18:25 21K 
[ ]Hgg38all.EIF3CL.hgdp_superpop_sunk.pdf2023-03-14 18:25 22K 
[ ]Hgg38all.EIF3CL.hgdp_superpop_wssd.pdf2023-03-14 18:25 21K 
[ ]Hgg38all.FAM220A.hgdp_superpop_wssd.pdf2023-07-31 17:45 21K 
[ ]Hgg38all.FOLH1.hgdp_superpop_sunk.pdf2024-02-02 14:15 21K 
[IMG]Hgg38all.FOLH1.hgdp_superpop_sunk.png2024-02-02 14:15 10K 
[ ]Hgg38all.FOLH1.hgdp_superpop_wssd.pdf2024-02-02 14:15 21K 
[IMG]Hgg38all.FOLH1.hgdp_superpop_wssd.png2024-02-02 14:15 11K 
[ ]Hgg38all.FRMPD2.hgdp_superpop_sunk.pdf2024-11-14 02:15 21K 
[IMG]Hgg38all.FRMPD2.hgdp_superpop_sunk.png2024-11-14 02:15 10K 
[ ]Hgg38all.FRMPD2.hgdp_superpop_wssd.pdf2024-11-14 02:15 21K 
[IMG]Hgg38all.FRMPD2.hgdp_superpop_wssd.png2024-11-14 02:15 10K 
[ ]Hgg38all.GPRIN2.hgdp_superpop_sunk.pdf2022-07-31 17:10 21K 
[IMG]Hgg38all.GPRIN2.hgdp_superpop_sunk.png2022-03-11 17:43 12K 
[ ]Hgg38all.GPRIN2.hgdp_superpop_wssd.pdf2022-07-31 17:10 21K 
[IMG]Hgg38all.GPRIN2.hgdp_superpop_wssd.png2022-03-11 17:43 12K 
[ ]Hgg38all.POLH.hgdp_superpop_sunk.pdf2023-12-20 18:44 21K 
[IMG]Hgg38all.POLH.hgdp_superpop_sunk.png2023-12-20 18:44 11K 
[ ]Hgg38all.POLH.hgdp_superpop_wssd.pdf2023-12-20 18:44 21K 
[IMG]Hgg38all.POLH.hgdp_superpop_wssd.png2023-12-20 18:44 11K 
[ ]Hgg38all.PTH2.hgdp_superpop_sunk.pdf2025-03-13 23:26 21K 
[IMG]Hgg38all.PTH2.hgdp_superpop_sunk.png2025-03-13 23:26 12K 
[ ]Hgg38all.PTH2.hgdp_superpop_wssd.pdf2025-03-13 23:26 21K 
[IMG]Hgg38all.PTH2.hgdp_superpop_wssd.png2025-03-13 23:26 12K 
[ ]Hgg38all.RASA4.hgdp_superpop_sunk.pdf2024-05-13 23:13 22K 
[ ]Hgg38all.RASA4.hgdp_superpop_wssd.pdf2024-05-13 23:13 22K 
[ ]Hgg38all.RASA4B.hgdp_superpop_sunk.pdf2024-05-13 23:13 21K 
[ ]Hgg38all.RASA4B.hgdp_superpop_wssd.pdf2024-05-13 23:13 22K 
[ ]Hgg38all.SPANXD.hgdp_superpop_sunk.pdf2024-01-30 08:16 21K 
[ ]Hgg38all.SPANXD.hgdp_superpop_wssd.pdf2024-01-30 08:16 22K 
[ ]Hgg38all.TFDP3.hgdp_superpop_sunk.pdf2024-10-19 02:04 21K 
[IMG]Hgg38all.TFDP3.hgdp_superpop_sunk.png2024-10-19 02:04 12K 
[ ]Hgg38all.TFDP3.hgdp_superpop_wssd.pdf2024-10-19 02:04 21K 
[IMG]Hgg38all.TFDP3.hgdp_superpop_wssd.png2024-10-19 02:04 12K 
[DIR]IGV_examples/2023-10-18 22:23 -  
[DIR]IGV_view_large_sv/2022-01-12 18:25 -  
[ ]IL37.bed.pdf2023-01-27 00:45 42K 
[ ]ILS_hg_bonobo.bed2020-12-30 10:06 2.3M 
[ ]ILS_hg_bonobo_cluster_with_orangutan.bed2021-01-09 11:16 203K 
[ ]ILS_hg_bonobo_cluster_with_orangutan_overlap.bed2021-01-09 10:50 86K 
[ ]ILS_hg_bonobo_cluster_wo_orangutan.bed2021-01-09 10:53 752K 
[ ]ILS_hg_bonobo_noncluster_with_orangutan.bed2021-01-09 11:17 2.4M 
[ ]ILS_hg_bonobo_noncluster_wo_orangutan.bed2021-01-09 10:54 2.0M 
[ ]ILS_hg_bonobo_noncluster_wo_orangutan_overlap.bed2021-01-09 10:58 790K 
[ ]ILS_hg_bonobo_wo_orangutan.bed2021-01-09 10:47 2.3M 
[ ]ILS_hg_chimp.bed2020-12-30 10:06 2.4M 
[ ]ILS_hg_chimp_cluster_with_orangutan.bed2021-01-09 11:16 204K 
[ ]ILS_hg_chimp_cluster_with_orangutan_overlap.bed2021-01-09 10:50 92K 
[ ]ILS_hg_chimp_cluster_wo_orangutan.bed2021-01-09 10:53 762K 
[ ]ILS_hg_chimp_noncluster_with_orangutan.bed2021-01-09 11:17 1.9M 
[ ]ILS_hg_chimp_noncluster_wo_orangutan.bed2021-01-09 10:54 2.0M 
[ ]ILS_hg_chimp_noncluster_wo_orangutan_overlap.bed2021-01-09 10:59 789K 
[ ]ILS_hg_chimp_wo_orangutan.bed2021-01-09 10:48 2.4M 
[ ]Inina_MMUR.hic.hap1.p_ctg.gfa.fa2024-07-31 20:05 2.1G 
[ ]Inina_MMUR.hic.hap2.p_ctg.gfa.fa2024-07-31 20:05 2.2G 
[ ]KCTD18.bed.pdf2022-06-19 20:21 54K 
[DIR]KCTD Family/2022-02-20 10:35 -  
[ ]KLRC.cds.nt_ali.fasta2023-04-07 22:16 6.6K 
[ ]KLRC.cds.nt_ali.fasta.rmchimp2b.fa2023-04-08 04:56 5.0K 
[ ]L1_GT.bed2020-06-30 16:31 460K 
[ ]L1_GT_bonobo_chimp.bed2020-08-03 17:35 11K 
[ ]L5IT1.pdf2023-10-18 17:51 74K 
[ ]L5IT2.pdf2023-10-18 17:51 76K 
[ ]L6CT1.pdf2023-10-18 17:51 77K 
[ ]L6IT1.pdf2023-10-29 00:39 78K 
[ ]L6b2.pdf2023-10-18 17:51 76K 
[ ]L23IT3.pdf2023-10-18 17:51 74K 
[ ]L56ITCar31.pdf2023-10-18 17:51 75K 
[ ]L56ITCar32.pdf2023-10-18 17:51 73K 
[ ]L56NP2.pdf2023-10-18 17:51 75K 
[ ]LINE.rmsk.bb2023-05-18 22:14 61M 
[ ]LTR.rmsk.bb2023-05-18 22:14 31M 
[ ]LTR10B2.fasta.aln2021-01-11 19:24 2.4K 
[ ]Last_exons_MSA.fa.aln2021-11-24 10:19 55K 
[ ]Low_complexity.rmsk.bb2023-05-18 22:14 3.7M 
[ ]MAGEB16_Macaque_plot_2000_aln.pdf2022-11-22 19:03 58K 
[IMG]MAGEB16_macaque.png2022-11-22 19:09 343K 
[ ]MALRD1.bed.pdf2022-07-10 01:06 38K 
[ ]MAP2.bed.pdf2022-02-16 12:40 50K 
[ ]MHC_ILS_cluster.bed2021-01-17 19:14 3.4K 
[ ]MHC_ILS_simple.col.bed2021-01-17 19:14 6.6K 
[ ]MHC_clustered.simple.bed2021-01-17 19:13 29K 
[ ]MHC_simple.bed2021-01-17 19:13 173K 
[ ]MHC_simple.col.bed2021-01-17 19:13 77K 
[ ]MUC4_all.fasta.aln2020-11-19 12:17 9.5K 
[ ]MUC4_full_all.fasta.prank.aln.best.fas2020-11-19 13:37 335K 
[ ]MUC12_all.fasta.aln2020-11-19 13:28 43K 
[IMG]Macaque_indian_HIFI_out.HIFI.spectra-cn.ln.png2023-02-19 17:52 112K 
[ ]Merged_valided_table.bed_ccre.bed_encode3.bed2021-12-24 10:40 4.8M 
[ ]NA19240#2_RGPDHAP_2000_aln.pdf2023-02-21 16:31 84K 
[IMG]NAT16.png2023-02-13 22:57 323K 
[IMG]NAT16_human.png2022-11-22 19:09 198K 
[ ]NEK5.fa.aln2023-02-28 01:10 1.9K 
[ ]NEURL1.bed.pdf2022-07-20 19:51 54K 
[ ]NEURL1B.bed.pdf2022-07-20 19:51 54K 
[DIR]NHP_Genomes_scripts/2023-06-16 00:14 -  
[ ]NLRP4_all.fasta.aln2020-11-19 14:04 8.4K 
[ ]NONSD.CN.bed2021-08-29 10:18 100K 
[ ]NOTCH2.bed.pdf2023-09-22 00:37 50K 
[ ]NOTCH2NLA.bed.pdf2023-09-22 00:37 48K 
[ ]NOTCH2NLB.bed.pdf2023-09-22 00:37 50K 
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[ ]NUTM2B.bed.pdf2022-07-20 19:50 50K 
[ ]NonEpilepsy_fingernail.mut2022-09-19 00:46 15K 
[ ]OG0010797.nt.aln.rlt2020-10-25 11:46 17K 
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[IMG]OWL_monkey_HIFI_out.HIFI.spectra-cn.ln.png2023-02-19 17:52 100K 
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[ ]Orangutan_h1_EEF2KMT_plot_2000_aln.pdf2023-02-20 02:53 23K 
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[ ]Other.rmsk.bb2023-05-18 22:14 3.9M 
[IMG]PAB_chr2a_end_result.repeat.heatmap.png2023-01-02 02:39 2.8M 
[IMG]PAB_chr2b_start_result.repeat.heatmap.png2023-01-02 02:39 2.6M 
[ ]PLAAT4.bed.pdf2024-09-28 19:48 56K 
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[IMG]PPA_chr2a_end_result.repeat.heatmap.png2023-01-02 02:39 7.9M 
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[ ]PTH2.bed.pdf2025-03-13 23:26 52K 
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[IMG]PTR_chr2a_end_result.repeat.heatmap.png2023-01-02 02:39 7.0M 
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[ ]Pvalb3.pdf2023-10-18 17:51 75K 
[ ]RANBP2_RGPD.cds.fa.aln_trim.aln2021-11-15 15:48 154K 
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[ ]RANBP2_RGPD_all.fa.aln.trim_gt082021-09-14 09:27 1.5M 
[ ]RANBP2_RGPD_all.fa.aln_geneconv_remove_gt062021-09-22 15:20 1.7M 
[ ]RANBP2_RGPD_all.fa.aln_gt062021-09-22 09:43 1.4M 
[ ]RANBP2_RGPD_all.fa.gt0_95.aln2021-09-17 14:52 628K 
[ ]RANBP2_RGPD_all.xml2021-09-19 09:41 306K 
[ ]RANBP2_RGPD_all_extra.fasta.aln2022-01-08 19:38 2.2M 
[ ]RASA4.bed.pdf2024-05-13 23:12 50K 
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[ ]RGPD1_2_Bonobo_2000_aln.pdf2023-02-28 02:31 87K 
[ ]RGPD1_2_Chimpanzee_2000_aln.pdf2023-02-28 02:31 87K 
[ ]RGPD1_2_Gibbon_2000_aln.pdf2023-02-28 02:31 79K 
[ ]RGPD1_2_Gorilla_2000_aln.pdf2023-02-28 02:31 87K 
[ ]RGPD1_2_Human_Puerto_1_2000_aln.pdf2023-02-28 02:31 113K 
[ ]RGPD1_2_Macaque_2000_aln.pdf2023-02-28 02:31 71K 
[ ]RGPD1_2_Marmoset_2000_aln.pdf2023-02-28 02:31 163K 
[ ]RGPD1_2_OWL_monkey_2000_aln.pdf2023-02-28 02:31 81K 
[ ]RGPD1_2_Orangutan_2000_aln.pdf2023-02-28 02:31 79K 
[ ]RGPD3_4_Bonobo_2000_aln.pdf2023-02-28 15:33 191K 
[ ]RGPD3_4_Chimpanzee_2000_aln.pdf2023-02-28 15:33 191K 
[ ]RGPD3_4_Gibbon_2000_aln.pdf2023-02-28 15:33 186K 
[ ]RGPD3_4_Gorilla_2000_aln.pdf2023-02-28 15:33 183K 
[ ]RGPD3_4_Human_Puerto_1_2000_aln.pdf2023-02-28 15:33 184K 
[ ]RGPD3_4_Macaque_2_2000_aln.pdf2023-02-28 15:33 121K 
[ ]RGPD3_4_Macaque_2000_aln.pdf2023-02-28 15:33 162K 
[ ]RGPD3_4_Marmoset_2_2000_aln.pdf2023-02-28 15:33 145K 
[ ]RGPD3_4_Marmoset_2000_aln.pdf2023-02-28 15:33 226K 
[ ]RGPD3_4_OWL_monkey_2000_aln.pdf2023-02-28 15:33 184K 
[ ]RGPD3_4_Orangutan_2000_aln.pdf2023-02-28 15:33 193K 
[ ]RGPD5_8_Bonobo_2000_aln.pdf2023-03-01 17:37 174K 
[ ]RGPD5_8_Chimpanzee_2000_aln.pdf2023-03-01 17:37 174K 
[ ]RGPD5_8_Gibbon_2000_aln.pdf2023-03-01 17:37 219K 
[ ]RGPD5_8_Gorilla_2000_aln.pdf2023-03-01 17:37 179K 
[ ]RGPD5_8_Human_Puerto_1_2000_aln.pdf2023-03-01 17:37 177K 
[ ]RGPD5_8_Macaque_1_2000_aln.pdf2023-03-01 17:37 126K 
[ ]RGPD5_8_Macaque_2000_aln.pdf2023-03-01 17:37 158K 
[ ]RGPD5_8_Marmoset_1_2000_aln.pdf2023-03-01 17:37 94K 
[ ]RGPD5_8_Marmoset_2000_aln.pdf2023-03-01 17:37 232K 
[ ]RGPD5_8_OWL_monkey_2_2000_aln.pdf2023-03-01 17:37 105K 
[ ]RGPD5_8_OWL_monkey_2000_aln.pdf2023-03-01 17:37 117K 
[ ]RGPD5_8_Orangutan_2000_aln.pdf2023-03-01 17:37 171K 
[ ]RGPD_all.cds.aln2021-09-10 15:05 295K 
[ ]RGPD_all.cds.fa.aln2021-09-27 09:40 109K 
[ ]RGPD_all.cds.fa.aln_trim.xml2021-09-20 09:16 124K 
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[ ]RGPD_all.fa.aln_gt06.aln.fa.xml2021-12-02 10:14 1.2M 
[ ]RGPD_all.fa.gt0_95.aln.fa.xml2021-09-21 09:19 439K 
[ ]RGPD_all.fasta.aln2022-01-08 21:58 7.3M 
[ ]RGPD_all.fasta.aln_gt0.6.xml2022-01-13 11:02 2.3M 
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[ ]RGPD_all.tree2023-02-17 00:54 42K 
[ ]RGPD_hg38.fa.aln2021-09-22 14:13 709K 
[ ]RNA.rmsk.bb2023-05-18 22:14 3.1M 
[ ]Rplot.pdf2023-05-28 19:43 3.5K 
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[ ]S8486.anno.rename2022-03-07 17:25 4.3M 
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[ ]SINE.rmsk.bb2023-05-18 22:14 64M 
[ ]SLC35F5.bed.pdf2024-11-18 17:38 45K 
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[ ]SLC_clustered.simple.bed2021-01-18 16:29 1.9K 
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[ ]SVs_stat.xlsx2020-04-21 13:49 123K 
[ ]SYT15.bed.pdf2022-05-05 19:56 53K 
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[ ]Simple.rmsk.bb2023-05-18 22:14 25M 
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[ ]TAAR2.bed.pdf2023-11-07 21:43 43K 
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[ ]TAAR6.bed.pdf2023-02-13 22:36 52K 
[ ]TARM1_all.fasta.aln2020-11-19 14:07 8.4K 
[ ]TEST.rmsk.LINE.bed2023-05-14 18:39 133M 
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[ ]TFDP3.bed.pdf2024-10-19 02:03 52K 
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[ ]WGAC.bed2023-07-17 04:09 20M 
[ ]ZEV_COMP.xlsx2020-04-21 13:49 79K 
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[ ]ZEV_raw_ccre.encode3.bed2021-12-24 11:11 858K 
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[ ]all.bed.pdf2022-03-20 09:29 242K 
[ ]all_50_tree_root.treefile2020-02-03 18:06 2.2M 
[ ]all_C4.fasta.aln_trimed.fa.XML2021-12-02 10:08 711K 
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[ ]all_C4_com_run1.log2021-12-03 09:28 13M 
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[ ]all_C4_new.fasta.aln_trimmed.xml2022-02-20 10:20 501K 
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[ ]all_MICAB.fasta.aln.treefile2021-10-21 11:19 2.0K 
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[ ]all_comb_marmoset_NEK5_NEK3_hg38.aa.aln2022-08-10 20:48 26K 
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[ ]all_dux4.fa.aln2023-11-08 23:07 3.5K 
[ ]all_het.het2020-04-08 14:40 40K 
[ ]all_hifi.fasta.prank.aln.best.fas2020-11-19 15:04 442K 
[ ]all_hor_mono.fa.aln.treefile2020-06-25 14:42 51K 
[ ]all_hor_mono_adjuctdir.aln.treefile2022-03-23 13:03 56K 
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[ ]all_mm39.fa.aln2022-10-19 17:12 308K 
[ ]all_nonsyn_final.bed2023-02-10 18:25 37K 
[TXT]all_null.csv2021-01-19 14:16 78K 
[ ]all_null.pi2020-12-14 16:57 39K 
[TXT]all_null_500.csv2021-01-06 10:18 116K 
[TXT]all_null_desert.csv2021-01-23 08:25 68K 
[TXT]all_omega.txt.annotation2020-10-28 10:09 1.0M 
[ ]all_sd_comb.fa.aln.filter.aln2022-07-30 18:04 11M 
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[ ]all_snp_filter.recode.het.het2021-12-16 10:09 1.7K 
[ ]all_sub_HOR.fa.aln.treefile2020-06-23 14:41 204K 
[ ]all_sub_HOR.fa.mega.nwk2020-06-23 12:53 151K 
[ ]all_sub_HOR.fa.mega_consensus.nwk2020-06-23 12:56 151K 
[ ]all_wo_mmu_hor_mono.fa.aln.treefile2020-06-26 16:05 45K 
[VID]assembly_eval_final.smk2022-07-18 05:38 14K 
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[ ]bonobo.merged.sort.bam2023-02-19 21:23 253M 
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[ ]bonoboSignificanWindows2lifted2hg38.intersect_encode.bed2020-12-15 08:57 55K 
[ ]bonobo_chr_all_100kb.pvalue_rm_repeat_wgac.bed2021-01-11 09:18 622K 
[ ]bonobo_del_missing_hg38_fh_del.bed2020-08-06 14:58 1.9K 
[ ]bonobo_del_missing_hg38_fh_polydel.bed2020-08-06 16:56 2.7K 
[TXT]bonobo_desert.csv2021-01-23 08:25 72K 
[ ]bonobo_desert.pi2020-12-14 16:57 35K 
[ ]bonobo_frameshifts_filtered.bed.anno2020-12-15 13:15 98K 
[ ]bonobo_indels_filtered_v2.bed.anno2020-12-17 11:01 102K 
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[ ]bonobo_missing_hg38_fh_del.bed.vep2020-08-10 08:15 229K 
[ ]bonobo_selection_intersected.bed2020-12-18 15:28 3.5K 
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[ ]bonobo_spe_PTERV_del_all.bed2020-07-23 09:53 7.2K 
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[ ]bonobo_sweepfinder_chr_all_10kb_rm_repeat_wgac.bed2021-01-09 11:22 6.0M 
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[TXT]ccre.txt2023-03-06 22:57 2.4M 
[ ]ccs.bam.q30.bam.bed2022-08-25 20:58 1.1G 
[TXT]ccs.bam.q30.bam_auto.txt2022-08-25 20:58 49  
[ ]chimp.fixed.bed2023-06-26 21:47 230K 
[ ]chimp.fixed.bed_gene_50kb_ccre.bed2023-05-11 17:19 173K 
[ ]chimpSignificanWindows2lifted2hg38.intersect_encode.bed2020-12-15 08:57 68K 
[ ]chimp_WT8861.peaks2023-10-23 17:00 3.6M 
[ ]chimp_WT8861.peaks.bed2023-07-18 19:00 3.6M 
[ ]chimp_chr_all_100kb.pvalue_rm_repeat_wgac.bed2021-01-11 09:20 598K 
[ ]chimp_clr_ins2021-03-04 16:07 57K 
[TXT]chimp_desert.csv2021-01-23 08:25 73K 
[ ]chimp_desert.pi2020-12-14 16:57 36K 
[ ]chimp_frameshifts_filtered.bed.anno2020-12-15 13:15 95K 
[ ]chimp_hifi.sam2020-10-26 09:18 20M 
[ ]chimp_human94.fasta.aln.treefile2022-09-27 01:34 3.7K 
[ ]chimp_indels_filtered_v2.bed.anno2020-12-17 11:01 113K 
[ ]chimp_selection_intersected.bed2020-12-18 15:28 2.7K 
[ ]chimp_selection_intersected_hg38.bed2020-12-21 14:56 908  
[ ]chimp_spe_L1_del_GT.bed2020-08-03 15:54 12K 
[ ]chimp_spe_PTERV_del_all_GT.bed2020-07-23 09:53 17K 
[ ]chimp_spe_SVA.bed2020-07-23 10:08 34K 
[ ]chimp_spe_SVA_GT_both.bed2020-08-13 11:41 69K 
[ ]chimp_sweepfinder_chr_all_10kb_rm_repeat_wgac.bed2021-01-09 11:23 5.8M 
[ ]chimp_top_1_10kb.bed2020-12-18 10:02 60K 
[ ]chimp_top_1_100kb_sf_add100kb_hg38.bed2020-12-22 12:55 3.0K 
[ ]chimpanzee.merged.sort.bam2023-02-19 21:24 241M 
[ ]chimpanzee.merged.sort.bam.bai2023-02-19 21:24 1.7M 
[ ]chm13.draft_v1.0_plus38Y.fasta2022-09-19 16:41 2.9G 
[ ]chm13.draft_v1.0_plus38Y.no_snyteny_1Mbp.bed2022-09-19 16:38 2.7K 
[ ]chr2_fusion_plot_1000_aln.pdf2023-01-03 22:32 30K 
[ ]chr2_fusion_plot_2000_aln.pdf2023-01-03 22:28 30K 
[ ]chr2_rgpd56_r.pdf2023-02-17 17:15 61K 
[ ]chr2_rgpd_r.pdf2023-02-17 04:19 890K 
[ ]chr6_7866.nt.aln2020-11-15 15:46 4.2K 
[ ]chr7_257.aln2020-11-15 10:40 779  
[ ]chr7_257.nt.aln2020-11-15 10:40 779  
[ ]chr7_5457.aln2020-11-15 10:40 863  
[ ]chr7_5457.nt.aln2020-11-17 11:36 863  
[ ]chr9_2865.aln2020-11-15 10:40 875  
[ ]chr9_2865.nt.aln2020-11-15 10:40 875  
[ ]chr10_GPRIN2.pdf2022-08-31 01:52 57K 
[ ]chr13_2727.aln2020-11-15 10:39 659  
[ ]chr13_2727.nt.aln2020-11-15 10:39 659  
[ ]chr17_488.aln2020-11-15 10:40 3.8K 
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[ ]chr17_5745.nt.aln2020-11-15 10:40 1.7K 
[ ]chr_all_100kb.pvalue_rm_repeat_wgac.bed2021-01-11 09:18 622K 
[TXT]chrx.recode.vcf2020-11-02 08:14 170M 
[ ]clint_hicanu_new_cen8h1v1_subsampling.fa.aln.treefile2020-06-25 14:06 11K 
[ ]clint_hicanu_new_cen8h2v1_subsampling.fa.aln.treefile2020-06-25 14:06 11K 
[ ]crab_reh.pdf2022-03-18 12:55 5.3K 
[ ]cram.md52022-11-17 05:21 400K 
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[TXT]del.summary.txt2023-10-16 02:53 107K 
[ ]draw.tree.newick2021-11-09 08:36 173  
[ ]exon_ILS_genebank.id2020-02-09 13:52 5.9K 
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[ ]expan_chr_candidates.bed2022-02-01 08:39 53K 
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[ ]fix_del_hg_coor.bed2021-01-20 09:17 89K 
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[ ]fixed_del_coor.bed2020-06-22 13:17 81K 
[ ]fixed_ins_coor.bed2020-06-22 13:17 152K 
[TXT]gff3sort.pl2023-05-14 19:37 8.7K 
[ ]gibbon.merged.sort.bam2023-02-19 21:18 2.7G 
[ ]gibbon.merged.sort.bam.bai2023-02-19 21:18 3.8M 
[ ]glchr8v9_cen_subsampling.fa.aln.treefile2020-06-25 14:06 12K 
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[ ]gorilla.fixed.bed2023-06-26 21:46 1.2M 
[ ]gorilla.fixed.bed_gene_50kb_ccre.bed2023-05-11 17:19 1.0M 
[ ]gorilla_frameshifts_filtered.bed.anno2020-12-15 13:15 114K 
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[ ]h1.align.bed2021-07-08 09:38 146K 
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[ ]h2_RGPD3_8_Gorilla_plot_2000_aln.pdf2023-02-14 18:31 368K 
[TXT]h_b_no0.csv2020-11-14 15:05 253K 
[TXT]h_c_balancing_selection_candidates.csv2020-12-04 16:12 332  
[TXT]h_c_no0.csv2020-11-14 15:05 271K 
[TXT]hb_cluster_500.csv2021-01-06 10:18 91K 
[TXT]hb_distant_500.csv2021-01-06 10:18 894K 
[TXT]hc_cluster_500.csv2021-01-06 10:18 96K 
[TXT]hc_distant_500.csv2021-01-06 10:18 891K 
[ ]hg38_chimp.paf2021-09-30 15:40 33K 
[ ]hg38_chm13.fa.aln2022-09-24 03:44 661K 
[ ]hg38_chm13.fa.aln.aln2022-09-24 06:59 220K 
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[ ]hg38_tmp.fasta.aln2022-09-26 17:18 12M 
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